| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_0639 |
|---|
| Symbol | |
|---|
| ID | 6332337 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010730 |
|---|
| Strand | - |
|---|
| Start bp | 658784 |
|---|
| End bp | 660526 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 642656924 |
|---|
| Product | extracellular solute-binding protein family 5 |
|---|
| Protein accession | YP_001930829 |
|---|
| Protein GI | 188996578 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000000307469 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAAT TCATTAAAAA TTTATTAATC ACCTTTGGAG TTATTCTTTT ATTCTTTTTA
CCATTTCATC TTATAAAGCC ATCAAATTCA AAGAACGAAT ATCCAATAAA AACCTTAGAT
ATAAAGAACC TTGAACCTGC CATTGGCGTT GAAGGTGGAG AGTTAAAAAG GTCTTTGTCT
GCAGATGCTA AAACATTAAA TCCAGTAATG GCTCAAGAGA CAAGCTCAAC TGCAATAATA
GGAATGTTGT TTAATGGACT TACGAAAACA AATGTTAAAA CGCTACTGCC GGAGCCAGAT
TTAGTAGAAA AGTGGGAAGT AAACAAAGAT GGCACTGTAT GGATTTTCCA TCTAAGAGAT
GCAAAATGGT TTGATGGAAA GCCGGTCTCT GCCGATGATG TAGTCTTTAC ATACAATCAA
ATTTACTACA ATCCAAACAT TCCATCTTCA GCTAAGGATG TTTTAACAGT TGAAGGTAAA
CCTTTTAAAG TTGAAAAAGT AGATGATAAA ACAATTAAAT TTACACTTCC AAAGCCTTTT
GCTGTTTTCT TAAATGCAGT TTCACAGCCA ATTTTACCAA AGCATGTATT AGAAAAATCA
GTCAAAGAAG GAAAATTTCC ATCTACTTGG ACGGTTAACA CAGACCCAAC GCAAATAATC
GGGACAGGTC CATATAGGCT TGTAAAATAC GTTCAAGGTC AGTATGTAAT ATATGAAAGA
AACCCTTACT ACTGGGAAAA AGATGAAAAA GGTCAAAAAC TACCTTATAT AGTATCTATA
AAATCACAGA TAATAAAAGA CCCTGACGTT TCTTTAGTTA AATTTTTGTC AGGAGAGTCT
GATATATACG GCGTAAGGGC TACCGATTTA TCTAAGCTTT TAGAAAATGC AAAAAAAGGA
GATTATACAA TCTACAACCT TGGGGCTACA CCTTCTACGT TGTTTTTATT TTTTAATCAA
AATCCAAAAG CACCGATTGA AAAATACAAA TTAAAATGGT TTCAAAACAC AAAATTTAGA
CAAGCTATTT CGTATGCGGT TGATAGAGAA GGAATAAAAA ATATAGTTTA CAATGGACTT
GCAACGCCAA TTTACACAGC AGTAACTCCG GCAGACAGAA GACTTTATGA TGAAAATTAT
TATCCAAAAT ACCCGTACAA TCTTCAAAAA GCAAAAGAAA TTTTATTATC TATCGGGTTT
AAAGAAGGGA AGGACGGGTA TTTGTACGAT AATGAAGGTC ATAAGCTAAG CTTTACGCTT
ATAACAAATG CAGGCAATAA AGAAAGAGAA GCAATTGGAA ATATTTTAAA AGAAGACTTA
AGAAAGATAG GGATTGAAGT AAACTTTCAA GGACTTGATT TTAATAACTT AGTCTCAAAA
CTAATGTCTA ATTATGATTT TGAAGCTGTA ATCATTGGGT TAACCGGAAG TATGGACCCA
TATTTTAGCC AAAATGTATG GCTTTCGTCC GGTCATATGC ATATGTGGAA TCCAAAACAA
CAAAAGCCGG CTACTGATTG GGAGGCTGAA GTAGATAGAC TTTTTAACCT TGCCGCTGTA
GAACTTGACC AGAATAAAAG AGATGAGCTT TACAAAAAAG CATTTAAAAT CATCGGAGAA
CAACAGCCTA TGATTTTTAT AGTTGCACCG CAGGAAATGG TAGTAGTAAG GAATAAGCTA
AAAAATGTTT TTCCTACTGT TTGGGGCTGG TATAAAGATG AGTATGTTTA TATAAAAGAG
TGA
|
|---|
| Protein sequence | MKEFIKNLLI TFGVILLFFL PFHLIKPSNS KNEYPIKTLD IKNLEPAIGV EGGELKRSLS
ADAKTLNPVM AQETSSTAII GMLFNGLTKT NVKTLLPEPD LVEKWEVNKD GTVWIFHLRD
AKWFDGKPVS ADDVVFTYNQ IYYNPNIPSS AKDVLTVEGK PFKVEKVDDK TIKFTLPKPF
AVFLNAVSQP ILPKHVLEKS VKEGKFPSTW TVNTDPTQII GTGPYRLVKY VQGQYVIYER
NPYYWEKDEK GQKLPYIVSI KSQIIKDPDV SLVKFLSGES DIYGVRATDL SKLLENAKKG
DYTIYNLGAT PSTLFLFFNQ NPKAPIEKYK LKWFQNTKFR QAISYAVDRE GIKNIVYNGL
ATPIYTAVTP ADRRLYDENY YPKYPYNLQK AKEILLSIGF KEGKDGYLYD NEGHKLSFTL
ITNAGNKERE AIGNILKEDL RKIGIEVNFQ GLDFNNLVSK LMSNYDFEAV IIGLTGSMDP
YFSQNVWLSS GHMHMWNPKQ QKPATDWEAE VDRLFNLAAV ELDQNKRDEL YKKAFKIIGE
QQPMIFIVAP QEMVVVRNKL KNVFPTVWGW YKDEYVYIKE
|
|---|
| |