Gene SYO3AOP1_0554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSYO3AOP1_0554 
Symbol 
ID6332327 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSulfurihydrogenibium sp. YO3AOP1 
KingdomBacteria 
Replicon accessionNC_010730 
Strand
Start bp569654 
End bp570913 
Gene Length1260 bp 
Protein Length419 aa 
Translation table11 
GC content33% 
IMG OID642656843 
Productdiaminopimelate decarboxylase 
Protein accessionYP_001930748 
Protein GI188996497 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0019] Diaminopimelate decarboxylase 
TIGRFAM ID[TIGR01048] diaminopimelate decarboxylase 


Plasmid Coverage information

Num covering plasmid clones67 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATCAGG TATATAATTA CTTCGGATAT ATAGAAAAAA AACTTTACTG TGAAGAGGTT 
AGCATATTAA ATTTAGCTTC AAAAGTTGGC ACTCCATTCT TTGTTTACAG TAAAAAAGCA
ATTTTAGATA AAATTAACCA GTATAAAGAA GCGTTCAAAG ATTATGATAC ATTAATCTGC
TATGCTTTAA AAGCAAATTC TAATCTTAGT CTACTAAAAA TTTTTGAAGA AAATGGTGTT
GGTGCTGACA TTGTATCCGG TGGAGAGCTT TATAAGGCAA AAAAAGCTGG ATTTTCTTCA
AACAAGATAG TTTATGCTGG AGTTGGAAAA ACGGACTTTG AAATTAGTTA TGCTATAAGT
GAAAACATTC TTTCTTTTAA CGTTGAAAGC TTTATGGAGC TTGATGTAAT CAATGAAATT
GCGGGCAAAC AAGAAAAAAA AGCCAATGTG TCTATAAGAG TTAATCCTAA TGTAGACCCA
AAAACCCATC CTTACATTTC AACAGGATTA AAGAAAAGCA AATTTGGAAT AGATATAGAC
CAAGCATTAG ATGCTTATAA AAAGGCTGCG AAGCTTGAAA ATTTAAATGT GGTAGGCGTT
CATTGTCATA TAGGCTCTCA GATAATGGAC ATTTCTGTAT TTAGAGAAGC TGCTGAAAAA
GTCGTAGACC TTGTGTTTAA ACTAAAAAAA GAAGGAATCG AATTAAAATT TATAGATATG
GGCGGTGGTC TTGGAGTTAA GTATCATCCT GACGATAACC CACCCACTCC AAAAGATTTA
GCAGACGCAA TAATTCCTGT AGTGAAACAA ACCGGATTAA AGTTAATAAT AGAGCCGGGA
AGGTCTTTGA TTGCTGAAGC CGGAGCATTA ATAACGAAAG TAATCTTTTT AAAAGATAAA
CAAGAAAAAC ATTTTGTTAT TGTTGATTCT GGAATGAATG ACCTTGTAAG ACCTGCCATG
TATAATGCTT ACCACCATGT TTTAAACGTT CAAGAAAAAG ATGAAGAGAT GATAGCTGAT
ATAGTGGGTC CAATTTGCGA GACAGGAGAT TTTTTAGCTC TTGATAGAAA AATTGGAAAA
GTAGAGAGAG GAGATTTGTT AGCCATAATG ACTGCCGGTG CATATGGTAG CAGCATGTCA
TCAAACTACA ACGTAAGACC AAGAGCGTTA GAAGTATTGG TTGATGGTTC AAACTTTAAA
GTAATAAAAG AAAGAGAAGA CTATAAACAT ATATCAAAAT ATGAAGAGGA AGTGCTATGA
 
Protein sequence
MHQVYNYFGY IEKKLYCEEV SILNLASKVG TPFFVYSKKA ILDKINQYKE AFKDYDTLIC 
YALKANSNLS LLKIFEENGV GADIVSGGEL YKAKKAGFSS NKIVYAGVGK TDFEISYAIS
ENILSFNVES FMELDVINEI AGKQEKKANV SIRVNPNVDP KTHPYISTGL KKSKFGIDID
QALDAYKKAA KLENLNVVGV HCHIGSQIMD ISVFREAAEK VVDLVFKLKK EGIELKFIDM
GGGLGVKYHP DDNPPTPKDL ADAIIPVVKQ TGLKLIIEPG RSLIAEAGAL ITKVIFLKDK
QEKHFVIVDS GMNDLVRPAM YNAYHHVLNV QEKDEEMIAD IVGPICETGD FLALDRKIGK
VERGDLLAIM TAGAYGSSMS SNYNVRPRAL EVLVDGSNFK VIKEREDYKH ISKYEEEVL