Gene Mpop_5239 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpop_5239 
Symbol 
ID6309247 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium populi BJ001 
KingdomBacteria 
Replicon accessionNC_010725 
Strand
Start bp5608860 
End bp5610326 
Gene Length1467 bp 
Protein Length488 aa 
Translation table11 
GC content70% 
IMG OID642653920 
Producttype I secretion outer membrane protein, TolC family 
Protein accessionYP_001927868 
Protein GI188584423 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGAACC GGAGCGGACA CGGCGGTGCG GCGGGACGGC AAATCGAGAA ACCGCAAGGG 
CTGATCGACG TGAAAGAACG GAACCCTGCG GCGCGGTCTG CGCTTCGGCT GGCTGGTGCC
GTCGCAACGG CGCTGGCTGT CGCAAGTCCG GCCGCCGCCG AGACCCTCGA GAGCGCGTTG
TCCCGCGCCT ATCAGGCGAA CCCGGCGCTG AACGCGGCGC GGGCGAACCT GCGCGCGACG
GACGAGGACG TGAACCGCTT CCAGGCCGGC TACCGCCCCA ACGCCGCGCT CTCCGCCGAT
ATCGGCGTCC AGCAGTTCCA GGGCTCGATC GCCGGCTCGC AATTGTCCGG TCGGCGGGGG
CTGACGGTGC CGAGCGGCGC GGGCCTCACC ATCAACCAGA ATGTCTTCGA CGGCTTTCAG
ACGGACAACC GCGTCCGCTC GGCCGAATCG ACCGTGCTCG GTACGCGCGA GGGCCTGCGC
CTCACCGAGA TGAACACCCT GTTCAACGCG GCCCAGGCCT ATATGAACGT TCTGAGCGAC
ACCGCGACGC TCGAACTGCA GCGCAACAAC GTCGAGGTGC TCGAAGAGCA GCTCCGCCAG
ACCCGCGACC GCTTCAACGT CGGCGAGGTG ACCCGCACGG ACGTGGCGCA GGCGGAAGCG
CGCCTCGCCG GTGCCCGCTC GCAGGTCAGC GCGGCGGAAG CCGCGCTGCG CGCCTCGATC
GGCATCTTCC GCCAGATCGT CGGCGTCGAG CCGCGCCAGC TCGCCCCGGG CCGCCCGCTC
GACCGCTACG TGCCGACCTC GCTCGATCAG GCGATCCTGA TCGGCCTGAA GGAGCATCCG
CAGATCCTGT CCTCGCTGCA CGCCGTCGAC GTGGCGGAAC TGCAGGTGAA GATCGCCGAG
GGCGCGCTCT ATCCCCAGGC GCAGGTCACC GGCGCGGTGC AGCAGCGCTA CGATCAGCAG
TTCCCCGGCG ACAACGGCGT CACCGCCTCG ATCGTCGGCC GGGTCAACAT CCCGCTCTAC
CAGGGCGGCG GCGAGTATGC CGCGATCCGG CAGGCCAAGG AGAATGTCGG GCGCGCCCGC
CTCGTGGCCG ATCAGGATCG CGACACGATC CGCGCCTCGA TCGTGCGGAC CTGGGGCAAC
CTCGAAGCCT CGAAGGCGCA GGTGATCGCC TCGCAGGCGC AGGTCCAGGC CAACGAGGTG
GCGCTCAACG GCGTGCGCGA AGAGGCGCGC GTCGGCCAGC GCACCACCCT CGACGTGCTG
AACGCGCAGC AGGAACTGCT CTCCGCCCGC GTCGCCCTGA TCCGCGCCCA GCGCGACCGG
GTGGTGAATT CCTACGACGT GGTCCAGGCG GTCGGCCGGC TCACGGTCCG CTTCACCAGC
CTGCCGGTGA CGCCCTACTC AGCCCGCGAG CACCTCGATC AGGTGCGCGA TCTCTGGTTC
GGCGTGCGCA CGCCTGACGG GCGCTGA
 
Protein sequence
MTNRSGHGGA AGRQIEKPQG LIDVKERNPA ARSALRLAGA VATALAVASP AAAETLESAL 
SRAYQANPAL NAARANLRAT DEDVNRFQAG YRPNAALSAD IGVQQFQGSI AGSQLSGRRG
LTVPSGAGLT INQNVFDGFQ TDNRVRSAES TVLGTREGLR LTEMNTLFNA AQAYMNVLSD
TATLELQRNN VEVLEEQLRQ TRDRFNVGEV TRTDVAQAEA RLAGARSQVS AAEAALRASI
GIFRQIVGVE PRQLAPGRPL DRYVPTSLDQ AILIGLKEHP QILSSLHAVD VAELQVKIAE
GALYPQAQVT GAVQQRYDQQ FPGDNGVTAS IVGRVNIPLY QGGGEYAAIR QAKENVGRAR
LVADQDRDTI RASIVRTWGN LEASKAQVIA SQAQVQANEV ALNGVREEAR VGQRTTLDVL
NAQQELLSAR VALIRAQRDR VVNSYDVVQA VGRLTVRFTS LPVTPYSARE HLDQVRDLWF
GVRTPDGR