| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_4953 |
|---|
| Symbol | |
|---|
| ID | 6311118 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 5290938 |
|---|
| End bp | 5294075 |
|---|
| Gene Length | 3138 bp |
|---|
| Protein Length | 1045 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 642653634 |
|---|
| Product | double-strand break repair protein AddB |
|---|
| Protein accession | YP_001927584 |
|---|
| Protein GI | 188584139 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3893] Inactivated superfamily I helicase |
|---|
| TIGRFAM ID | [TIGR02786] double-strand break repair protein AddB, alphaproteobacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.28213 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.220152 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCGA CCGCCGCTCC CCGCGTCTTC ACGATTCCCC CCGGCGCGCC GTTCCTGCCG
ACGCTGGCGG ATGCCCTCGT GTCCGGTCGG CTGGTCGGCG CGGTCGGCCA CGATCCGTTC
GCGCTCGCCT CGGTCACCCT CTACCTGCCG ACGCAGCGCG CGGTGCGGGC GCTCTCCACG
GTGCTGGCGC AGCGTCTCGG CGGGGCGGCT TTGCTGCCGC GCATGATCCC CCTGGGCGAG
GCCGACGAGG CGGAACTCGA CCTCTCGGCC AGCACCCTGC TCGACACGCC CGAGGATCTG
CTGCACCCCT CGATCCCTGC GCTGGAGCGC CGGCTGATCC TGGCCCGCCT CGTCCAGAAA
TGGGCCGAGA CGGTGGACCG CGAATTGCTG CCCATCGACG ACGAGGTGCC CTTCCTCGTC
CCCTCCTCCC CCGCCGACGC GGTGGCGCTC GCCGCCGACC TCGAGGGGCT GATGGACGCG
CTCACCGTCG AGGGCCTGCC CTGGAGCGAG ATCGCCTCCG CCGTCGAGGC CGAGCATTCG
CGCTATTTCC GCCTCACCCT CGACTTCCTC AGGATCGCCG CCGAGCACTG GCCCGAGATC
CTCGCCGCCC GCTCGCTCGC CGACCCCACC GCCCGCGCCC GCCGCCTCGT CCTGGCCGAG
GCCGACCGGC TCACCCGCGA CCGGCCGGAC GATCCGATGA TCGTGGCCGG TTCCACCGGC
TCGGTGCCCG CCACCGCCCG GCTGATCGCC GCGGTGGCGC GCCTGCCCCG CGGCGCCGTG
GTGCTGCCGG GGCTCGACCT GCATCTCGAC GAAGAGGGCT GGGAGGCGAT CGACGGCGCC
GGCGGCACGC GGGACGAGAT CGCACACGGC CACCCGCAGG CGATCCTGCG GGCGCTGACC
GGGCGGACGG GGCTCGCCGT CGCGCGCGGC GAAGTCGAGA CGCTCGGCAC GCTGTCGCCC
GAGGCGGTGG CCCGGGAAAG GCTGCTGTCG CAGGCCCTGC GCCCGGCCGA GACCACCGAC
GCCTGGGCCC GGCTCGATGG GGCCGAGCGG CTGGCGCTCG CACACGAGGG CATGGAAGGC
CTCGCTGTGG TCGAAGCGGC GGACGAGCGC GAGGAGGCGC TGGTCGCCGC GCTGGCCCTG
CGCGAGACCC TGGAGACGCC CGGCGCCACC GCCGCCCTCG TCACCCCCGA CCGGGGGCTG
GCGCTCCGGG TCTCCGCCGA ACTCGCCCGC TGGGGCATCG CGGCGGAGGA TTCGGCGGGC
CTGAGCCTGG CCCGTTCGCA AGCAGGCCGC TTCGCCCGGC TCGTCGCCGA ACTCGCCGCC
GAGGTGGCAC CGGCCCGCGT CATCGCGCTG CTCGCCCACC CCTTCGTCCG GCTCGGGCTC
ACCCGCAGCG AGGTCGTGCG CGCCGCCGCC GCCCTGGAGA TCGGCGGCCT GCGCGGTCCC
GCCCCGATCC CGAAGAACAG TTTCGACGGC ATGCGTGCCG CCGTGGCGCT GCAACGCAAC
GCCACCGAGC GGGTGCCGCG GGCCAAGAAG CGCCTCAAGG CGATCGACTG GGATCTCTCT
GAGAACATCC TCGACCGGTT GGAGATCGCC CTCGATCGCT TCCGCACCGA CCTCCAGCCC
GCCATCGGCA ACCTCGTGGC GCTGGCCGCC CTTCACCGCG AGGCCTGCGA GCGGATGATG
GGCGGGGCGG AGACGGAGGA GGAGATCGAC GACCCCTCCC TCGACACCCT CGACGGGCTG
TTCGACGATC TCGAATCGGC CGAGCAGGAG GCGCTGCCGG GACGCTTCTC CGATTACGCC
GCCTTCTTCA CCGCGCTCGC CCGCGACCGC ACGGTGGCCT GCGCCCAGGG CAACGCGCAT
CCGCGCCTGC GCATCCTCGG GCCGCTCGAA GCGCGCCTGC TCTCCGTCGA CCGGATCGTG
CTCGGCGGCC TCGACGAGGC AGTCTGGCCG GTGCGCCAGA CCACGGACGC CTTCCTCAAC
CGGCCGATGC GCGGACAGGT GGGCCTGAGC CCGCCCGAGC GCCGGATCGG ACAGGCCGCC
CACGACTTCG TGCAGGGCCT GGGCATCCAC GACGCCGTGG TGACCCGCGC GGCCAAGCGC
GAGGGCTCGC CGACCGTGCC CTCGCGCTTC CTCCAGCGCC TGCGCGCCTT CGGCGGCGAC
GCGGTCTGGG CCGGGGCCAT CGCCCGCGGG CAGCGCCTGC GCGGGCTCGC CGCGATCCTC
GACCGCGGTC GGGAGGCGCC GCCGCCGCGC CTGACAAGGC CCGCGCCGAA GCCCGATCCC
GCGCTGTTCC CGTCGCGCCT CAGCGTCACC GAGATCGAGA CGCTGGTGCG CGACCCCTAC
TCGATCTTCG CGCGGCACAT CCTGGGGCTG GAGGCGCTGG AGCCGATGGC GGTGGTGCCC
GGCGCGGCCG AGCGCGGCAG CCTGATCCAC AAGATCCTCG GCGACTTCTC GCAGGCCCAT
CCCGGCCCGC TGCCGGCGGA TGCGGAGACG CTGCTCTACG CCATCGCGCT CGACGCCTTC
GGCCCGCTCC AGGACCAGTA TCCGGAACTC TACGCCGAGT GGTTCCCCCG CTATGAGCGG
ATGGCGGTCG CCTTCCTCGA ATGGGAGGCG AGCCAGCGCC AGGGCCTGCG CGCCATCCAT
GCGGAGCGAT CCGGCAAGCT CACCATCCCG CTCGGCGAGC GGACCTTCAC CCTCTCGGCC
CGCGCCGACC GCATCGAGGT CCGCGCCGAC GGCGGCTACT GCATCGTCGA CTTCAAGACC
GGCACGCCGC CGAGCAACCG CACGGTCTTC GCCGGCTTCT CGCCCCAGCT CACCCTCGAG
GCGGCGATGC TGATGCACGG CGCCTTCGAG GGGCTGAAGG CGGCTTCTGC CCCGGATCTC
CTCTACGTCC ATGCCTCGGG CGGGCGCGAG CCGTTCCGGC CGATTCCGGT GAAGGCGCCG
CCGGGTGACG CGCGGGCGGT GGCGGCCATC GTCGAGGAGC ATCTGGAGCG CCTGCGCGGG
CTCATCGCCC GCTACATGAC CGGCGAGGCC GCCTATCCGT CGCGCCCCTA CCCGCAATAT
GTGCGTGCCT ACAACGAGTA CGACCATCTC GCCCGCGTGC TCGAATGGTC GCTGGCGGGC
GAAGGAGAGG CCGCGTGA
|
|---|
| Protein sequence | MSATAAPRVF TIPPGAPFLP TLADALVSGR LVGAVGHDPF ALASVTLYLP TQRAVRALST
VLAQRLGGAA LLPRMIPLGE ADEAELDLSA STLLDTPEDL LHPSIPALER RLILARLVQK
WAETVDRELL PIDDEVPFLV PSSPADAVAL AADLEGLMDA LTVEGLPWSE IASAVEAEHS
RYFRLTLDFL RIAAEHWPEI LAARSLADPT ARARRLVLAE ADRLTRDRPD DPMIVAGSTG
SVPATARLIA AVARLPRGAV VLPGLDLHLD EEGWEAIDGA GGTRDEIAHG HPQAILRALT
GRTGLAVARG EVETLGTLSP EAVARERLLS QALRPAETTD AWARLDGAER LALAHEGMEG
LAVVEAADER EEALVAALAL RETLETPGAT AALVTPDRGL ALRVSAELAR WGIAAEDSAG
LSLARSQAGR FARLVAELAA EVAPARVIAL LAHPFVRLGL TRSEVVRAAA ALEIGGLRGP
APIPKNSFDG MRAAVALQRN ATERVPRAKK RLKAIDWDLS ENILDRLEIA LDRFRTDLQP
AIGNLVALAA LHREACERMM GGAETEEEID DPSLDTLDGL FDDLESAEQE ALPGRFSDYA
AFFTALARDR TVACAQGNAH PRLRILGPLE ARLLSVDRIV LGGLDEAVWP VRQTTDAFLN
RPMRGQVGLS PPERRIGQAA HDFVQGLGIH DAVVTRAAKR EGSPTVPSRF LQRLRAFGGD
AVWAGAIARG QRLRGLAAIL DRGREAPPPR LTRPAPKPDP ALFPSRLSVT EIETLVRDPY
SIFARHILGL EALEPMAVVP GAAERGSLIH KILGDFSQAH PGPLPADAET LLYAIALDAF
GPLQDQYPEL YAEWFPRYER MAVAFLEWEA SQRQGLRAIH AERSGKLTIP LGERTFTLSA
RADRIEVRAD GGYCIVDFKT GTPPSNRTVF AGFSPQLTLE AAMLMHGAFE GLKAASAPDL
LYVHASGGRE PFRPIPVKAP PGDARAVAAI VEEHLERLRG LIARYMTGEA AYPSRPYPQY
VRAYNEYDHL ARVLEWSLAG EGEAA
|
|---|
| |