Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpop_4321 |
Symbol | |
ID | 6309617 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium populi BJ001 |
Kingdom | Bacteria |
Replicon accession | NC_010725 |
Strand | - |
Start bp | 4605102 |
End bp | 4606835 |
Gene Length | 1734 bp |
Protein Length | 577 aa |
Translation table | 11 |
GC content | 78% |
IMG OID | 642653006 |
Product | RNA-binding S4 domain protein |
Protein accession | YP_001926962 |
Protein GI | 188583517 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0568238 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGACA TTCCAGACCC CTCCCCGGCC GCGCCCGCGG ACCAGACCGC GGATCAGCCC GCCGCGCCCG AGGGCGAGCG CATTGCCAAG GCCATTGCCC GCGCCGGCAT CGCGTCCCGC CGCGATGCGG AGGCGATGAT CGAGGCCGGC CGCGTCAGCC TCAACGGCAA GATCCTGACC TCGCCCGCGA TCAACGTCAC CGAATCCGAC CGCATCGCGA TCGACGGCGA GCCTCTGCCC GCCCGCGAGC GCACCCGGCT GTGGCTGCTG CACAAGCCGC GCGGCGTCGT CACCACCGCC CGCGACCCGG AAGGGCGCCA GACGGTGTTC GACGGGTTGC CCGACGACCT GCCGCGGGTC GTCGCCATCG GCCGGCTCGA CATCAACACC GAGGGGCTCT TGCTCCTCAC CAATGACGGC GGGCTCGCCA AGGTGATCGC CCATCCCGAT ACCGGCTGGC TGCGCCGCTA CCGGGTGCGC GCCTTCGGCG ACATCACCCA GGCCGATCTC GACCGGCTCA AGAAGGGCGT GACCGTCGAC GGCATGGAGT ACGGCCCCGT CGAGGCGACC CTCGACCGGG TGCAGGGCGA CAACCTCTGG CTCACCCTCG GCCTGCGCGA GGGCAAGAAC CGCGAGGTCA AGCGCATCCT CGAACATCTC GGCCTCTCGG TGAACCGGCT GATCCGGCTC TCGTTCGGGC CGTTCCAGCT CGGCGATCTC GAAGTCGGGC TGGTCGAGGA GATCCGCACC AAGGTGCTGA AGGAGCAGCT CGGCAAGAGC CTCGCCGAGC AGGCCGGTGT CGATTTCGAG AGCCCGGTGC GCGAGGCCAT CGCCCCGTTC GGCAGTCCGA AGAAGGCGGC CCGCGCCGCG CAGAGCCCGC GGGCCGAGGC GCCCGCCGGG CGGGGCGGCC GTCAGGGCGC CCACGACGAG GGACGCTCGG AGCCCCGCTC GGGCGCCCGC GGCGGGGCGG CGGGCCGTCC GCCGCGCGAT CCCGCCCGTC CGGCCGCGCC GCGCGCCGGT GCGCGCCCGG CCCAGCGGGC GCCCTCGCCC ACCGTGTGGC GGGCCGACGA CGAGACCCGC CCCCGGGCGA GCAAGGTGCC GCGCCGCGGC ACCGATCCGA AGACCGCCCG CGCGGCGGCG GCCGAGCGCG GCCGCGAGCG GGTCGGCGCG ATCCAGGCGG CCGGCGAGCG CCGGGTGCTG GTCGAGCGGC TCCAGCCCAC GCCGGAGACG CCCGCCCCCG AGCCGCACCG CCGGGTCCGC TTCCGCACCG AAGAGGAGCG CTCCGCGCGT CAAGAGAGAC CCGAACGTCA GGAAAGACCG GAGCGTTCGC GCGAGGACCG GCCGCGCCGG GATGCGCCTG CGGGCGATGC CCGTCCCCGC CGCCGCGAGG CCGGAGAGGG CGCCGCCCCC GAGCGGCGCG GGCCGCCGCG CGAGCGCCGC TTCGAGGGTG AGGGCCGTCC CGAGGGCCGC CCGCCCCGCG AGCGCAGCGA AGGCCGGCCC CAGCGCGACC GCGGCGAGGG TGCCCCCCGC CGCGAGCGTT CCGCCGAGGC GGGGGCGCCC GAGCGCCGCG GCCCCCCGCG CGACCGGCCC CGCGCCGCCG AGGGCGAGCG CCCGGCGCGT TCCCCGCGCG GGGCCGACGC GCCCGAGCGC GGCGGTTTCC GCAAGGGGCC GGGGGGGCGG CTCCGGCGGC AAGCCCGGCA TCAAGGGCGG CGCCCGCGAC GGCGCCAGGG GTGA
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Protein sequence | MTDIPDPSPA APADQTADQP AAPEGERIAK AIARAGIASR RDAEAMIEAG RVSLNGKILT SPAINVTESD RIAIDGEPLP ARERTRLWLL HKPRGVVTTA RDPEGRQTVF DGLPDDLPRV VAIGRLDINT EGLLLLTNDG GLAKVIAHPD TGWLRRYRVR AFGDITQADL DRLKKGVTVD GMEYGPVEAT LDRVQGDNLW LTLGLREGKN REVKRILEHL GLSVNRLIRL SFGPFQLGDL EVGLVEEIRT KVLKEQLGKS LAEQAGVDFE SPVREAIAPF GSPKKAARAA QSPRAEAPAG RGGRQGAHDE GRSEPRSGAR GGAAGRPPRD PARPAAPRAG ARPAQRAPSP TVWRADDETR PRASKVPRRG TDPKTARAAA AERGRERVGA IQAAGERRVL VERLQPTPET PAPEPHRRVR FRTEEERSAR QERPERQERP ERSREDRPRR DAPAGDARPR RREAGEGAAP ERRGPPRERR FEGEGRPEGR PPRERSEGRP QRDRGEGAPR RERSAEAGAP ERRGPPRDRP RAAEGERPAR SPRGADAPER GGFRKGPGGR LRRQARHQGR RPRRRQG
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