Gene Mpop_3854 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpop_3854 
Symbol 
ID6312351 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium populi BJ001 
KingdomBacteria 
Replicon accessionNC_010725 
Strand
Start bp4100670 
End bp4102841 
Gene Length2172 bp 
Protein Length723 aa 
Translation table11 
GC content70% 
IMG OID642652556 
ProductTetratricopeptide TPR_2 repeat protein 
Protein accessionYP_001926516 
Protein GI188583071 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCGAAC ATCGTACAAC GCGCACGCTC GGGCGGGCCG CCGGAAAGGC CTCGGCGGCG 
GAGCCGGTCG ATCGCTACCT CGCCAAGGCG GCGACGCACC GGGTGGCCGG CCGGTTCGAC
AAGGCGCGCC GCAACCTCCG GATGGCGCTC GACGCGGTGC CGGGCCACGC CGCCGCGCAT
TTCGAACTCG GGCTGCTCAC CAACCGGACC GAGGCGCCAG CCGCCGCGGT GCCCCACTTC
GTCGAAGCCC TCAGGGCCGC GCCCGAGCGG CCGGCCTACT GGCTCGCGCT GGCCACCACG
CTGCTGACGC TGAACCGCGT CGGCGAGGCG CGCGCGCTGA TGGAGCGCTT CCGCGACAAG
GGTTTGCCCG ACGACGAGAC TCGCCGGGTC CTCAAGGACT TCGTCGAACA GGCGTTCACG
CTGGGCCAGG CGCATTACGA GGCGAACGAT CTGACCACCG CGGAGATCCT GCTCGACCTC
GTCATCGGCC TGGACGACAC CCACGCCAAG GCGACCCATC TCGCCGGCGC CGCCGCCGCC
CGGCGCGGCC ATCATCAGCA GGCCTACGAC CTGTTCAGCA TCGCCATCTA CCGCGAGCCG
GACAACGCCG CCTTCTTCAG CAGCCTCGGC GCGCTCCTGA TCATCCTCGG GGACAACTCG
GGTGCGATCG CGGCGCTGGA AAAGGCCGTC ACGCTCGATC CGGATCTGGC CATCGCGCAT
TCGAACCTGT CCGGCGCGTT CCAGCGCGTC TCCCACCACG CCTCGGCCGT GAGCCATGCG
CAGCGCTCGA TCGCGCTCAA TCCGAACTTC TCCGGCGCCC ATATCAACCT CGGATGCGGC
CTGAAGAGCC TCGGCCGCCT GCCTGAGGCG ATCGCGAGCT TCGACCGGGC GCTGGCCCTC
GATCCGCGCA ACGTCGCGGC CCATTCCAAC CGGCTCTTCG CCAAGCTCTA TTCCGAGGGC
GTCTCCCCCG AAGACTACGC CGCCGACGCG CGGAGCTTCG GGACGCGCCT CGCCGAGCCG
CTCCTGCGGC GGCGGCCCTT CACCAACGAT CGCGATCCCG ACCGTCGCCT GCGGGTCGGG
TTCGTCTCGG CCGACCTCTG CACCCACGCC GTCGCCCGGT TCATCGAGCC GTTCATGCGC
CACATCGATC GCGAGCGGTT CGAGACGCGC GCCTACATGA CCCAGGCCGG GGAGGATGCG
GTCTCGGCCC GCCTGCGCCT GCTCTTCGAC GGCTGGCACA ACATCGCCGC CCTCGACGAC
GACGCGGCCG CCGACCTGAT CGAGGCGGAC GCCATCGACA TCCTCGTCGA CCTGTCGGGC
CACAGCGCCG GCCACCGGCT GCTCGTTTTC GCCCGCAAGC CGGCGCCGGT CCAGGTCACC
TGGATCGGCC ACCCGGCGAC GACGGGCCTG CGCGCCATGG ACTACCGCCT GACGGATTTC
GGCCACGACG AGCCCGGCTT GACCGAAGTG CTTCACACCG AGACGCTGTG GCGGCTTCCC
TATCCCCTGA TGTGCGCCAC CTACGCGCCG CCGGAGGACA TCCCGCCCGT GCGCGGGTGT
GCGCCGTTCG AGGATAACGG CTTCATCACG TTCGGCGTCA TGAATCGCTT CGAGAAGATC
GGCGACCGGA CACTGGAGGC CTGGGCCGGC ATCCTGCGGG CGCTGCCCGA GTCGCGCTTG
TTCCTGGTCG CCGCCGACGT GGACAAGCCG GAGGTCCGAG GACAGATCGA GGCGCGCCTG
TCGCGCGCCG GGCTACCGCT GGACCGGATA CGCCTGCATC CTCGTGTCAC GAGCGGCTAC
TATGCCCTCT ACTACGAGGT CGATATCGCC CTCGATTCCT TCCCCTACAA CGGCGGCACG
ACGAGTTGCG ACACACTTTC CATGGGTGTC CCCCTGATCG CCCTTCACGG CAGCCATGCC
GCCGATCGCG CCGCGGCCGC CATCCTGACC GCGGCGGGGC TGCCCGAGTT GGTGACCGAA
ACGCGGGAGG ACTATGTGGC GCTGGCCATC GCCCTTGCGA GCGACCCTGT CCGCCTGCGC
GCCCTCCGCT CGGGATTGCG CGAGCGCGTC TTCGCCAGCC CGCTCATGGA TCATGCGCGG
CACGCCGCGG CGGCGGGTGA GGCCTTCCGC GCCATGTGGA GGCGCTGGGT CGATGCAGAT
CGCTCCGCTT GA
 
Protein sequence
MLEHRTTRTL GRAAGKASAA EPVDRYLAKA ATHRVAGRFD KARRNLRMAL DAVPGHAAAH 
FELGLLTNRT EAPAAAVPHF VEALRAAPER PAYWLALATT LLTLNRVGEA RALMERFRDK
GLPDDETRRV LKDFVEQAFT LGQAHYEAND LTTAEILLDL VIGLDDTHAK ATHLAGAAAA
RRGHHQQAYD LFSIAIYREP DNAAFFSSLG ALLIILGDNS GAIAALEKAV TLDPDLAIAH
SNLSGAFQRV SHHASAVSHA QRSIALNPNF SGAHINLGCG LKSLGRLPEA IASFDRALAL
DPRNVAAHSN RLFAKLYSEG VSPEDYAADA RSFGTRLAEP LLRRRPFTND RDPDRRLRVG
FVSADLCTHA VARFIEPFMR HIDRERFETR AYMTQAGEDA VSARLRLLFD GWHNIAALDD
DAAADLIEAD AIDILVDLSG HSAGHRLLVF ARKPAPVQVT WIGHPATTGL RAMDYRLTDF
GHDEPGLTEV LHTETLWRLP YPLMCATYAP PEDIPPVRGC APFEDNGFIT FGVMNRFEKI
GDRTLEAWAG ILRALPESRL FLVAADVDKP EVRGQIEARL SRAGLPLDRI RLHPRVTSGY
YALYYEVDIA LDSFPYNGGT TSCDTLSMGV PLIALHGSHA ADRAAAAILT AAGLPELVTE
TREDYVALAI ALASDPVRLR ALRSGLRERV FASPLMDHAR HAAAAGEAFR AMWRRWVDAD
RSA