| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_3493 |
|---|
| Symbol | |
|---|
| ID | 6311108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 3721324 |
|---|
| End bp | 3722010 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642652216 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IA, variant 3 |
|---|
| Protein accession | YP_001926178 |
|---|
| Protein GI | 188582733 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.292984 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGATG CCTTCCCCGC CGCGCCTCCC CTCGCCCTCG TGATCTTCGA CTGCGACGGT
GTTCTGATCG ACAGTGAGCC GATCAGCCTC GCGACCCTGA CGCGGGGTCT CAACGGGATC
GGGCTCGCCA TCGACATCGA TGCCGTGCGC GAGCGCTTCG CCGGAACCTC CATGACCTCG
ATCATGGAGC GGGTCGCCCG AGAGGACGGA ATCACCGCCC CGGACGGCTT CGTCGAACGG
GTGAAGGCGG AGACGCTCGC GGCCTTCGAG GCGGAGCTGA CCGCCATGGC CGGCATTGCA
GAGGCTGTCG GTCTTCTTCA TCTCCCCTTC TGCGTCGCCT CGAGCAGCGA TCCGGTGCGG
CTGCGGCGCT CCCTCGGCCT CACCGGCCTG CTGCCGCTGT TCGAGGGTCG CGTCTTCTCC
TCCGCGCAGG TGGCGCGTGG AAAGCCGTTC CCGGACCTGT TCCTCTTCGC CGCCGAACGG
ATGGGCATCG CGCCGGCAAA TTGCCTCGTG ATCGAGGACA GCGTGCCGGG CGTGCAGGCG
GCCCGTGCCG CGGGCATGCG CGTGGTCGGC TTCACCGGCG GCGGTCATTG GAGCCACGAC
CGGGCCGGGC GGGATCTCCT GGCGGCCGGC GCGGCCACGG TCTTCTCCGC GCATGCCGAT
CTCGGACGCA TCGTCGCCGG AGACTGA
|
|---|
| Protein sequence | MTDAFPAAPP LALVIFDCDG VLIDSEPISL ATLTRGLNGI GLAIDIDAVR ERFAGTSMTS
IMERVAREDG ITAPDGFVER VKAETLAAFE AELTAMAGIA EAVGLLHLPF CVASSSDPVR
LRRSLGLTGL LPLFEGRVFS SAQVARGKPF PDLFLFAAER MGIAPANCLV IEDSVPGVQA
ARAAGMRVVG FTGGGHWSHD RAGRDLLAAG AATVFSAHAD LGRIVAGD
|
|---|
| |