| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_3048 |
|---|
| Symbol | |
|---|
| ID | 6310934 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 3274694 |
|---|
| End bp | 3277018 |
|---|
| Gene Length | 2325 bp |
|---|
| Protein Length | 774 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642651774 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001925738 |
|---|
| Protein GI | 188582293 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.20503 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGTCCC GCCCCGCCAT GCGCCCTGCC GCCTGGCTCC TCGCCGCCGC GCCGCTCGCC
CTGTCCGGGG CTGCCTCCGC TCAGACCGCG AGCGAATCCG TCACCCTGGA AGAACTCGCC
GTCACCGGCG AAGGCAGCGC GCAAGGGCAA GCAGGGGCCG GTGCGTCCGG CTTCGGCGTC
GCCGCCCTGC CGGGCGCAGC CCCTCTCGTC ATCGAGCGCC CGGTGAGTCA GGTTGTCACC
GCGGTCGGGC GCGAGGGCAC CATTGCCAAC CGCCCCGCCA CCTCCATCGG CACGGTGCTG
CTCGACAGCC CCGGCGTGAC CCTGCGCCAG GGCAATGGCG GGCGCGACGT GGTGATCTCG
ATCCGCGGCA ACAACGCCCG CGCCACCGGC GTCACCCGCA ACATGGTGGT GCTGGAGGAC
GGCTTTCCCG TCACCCAGCC CGACGGCGCC TCGCGCTTCG ATCTGGTCGA TCCCCGCGCC
TATTCGCGCA TCGACGTGTT CCGGGGACCA CAATCGGCTC TGTTCGGCAA CTACGCCACC
GGCGGCGCGC TGACCTTCCG CACCCGGACC GGCCGCGAGA TCGACGGCTA CGAGATCGGC
GTCGATGCCG GCAGCTTCGG CTATCTCAGC CATTATTTTA CGGTGGGCCG CGCGAGCGGC
CCGTTCGAGG TCAGCCTGTT CGCCAGCGAC GTGCGCGGCA ACGGCTATCA GGACAACAGC
TCCTACGACA CGCAGACGAT CAACCTGCTC GCGAGCTACA CGCCGAGCCC GGACAACCGC
TTCACCCTGA AGGTCATCAA CAACGAGCTC ACCGCCAACA TCCCGGCCCG CTCGTCGCTG
AACCAGTTCC GTCTCAATCC GTATCAGCGC GGCTGCGACG CGGCGGCGAG CGCCGCCCCC
GGCTGCACCA CCTTCGGTCT CTTCGCCAAT GGTGCCTTCG GCCCTCGGGT GCCGGTGACG
GCGACCGAGG GGGCGTTCCG CCGCAACGAC CGGCGCACCA TCATCGCCGG GCGCTGGGAG
CACGACATCG ACGCGCAGAC GACGTGGCGG GTGCAGGTCG GCTTCGACGA GCGCAATTAC
AACCAGCCGT TCTACACCAC CTCGGGCCGG GGCAGCCTGC CCTCCTACTT CGTGCAGACC
GACCTGACCC GCCGCGGCGA GCTGTTCGGC CTGCCGGCGG TCGGTTACGT CGCGCTCGCC
TACAGCACGG TGGACATCGC CGCCTCGGTC TACAACCGGG CCCCCTACGG CGGCGCCCGA
CTCGGCGCGC TGATCGGGCT GCAGGATACG GTGCAGTCGA ATCTCGGCGG TCGGGCCCGA
CTCGAACTCG AACTCGCGCC GCAATGGACG GCGGTGGCGG GCATCAGCGC CGAGCAATCG
AGTATCCTCG GGCGCAATCG AACCTTCGCC ATCAGTGCCG CCGGCACGAC GTCGGCCGTA
GCGTTGGCCG ACCGCAGCTT CCTCAACGTC GCGCCGGAAC TCGCCCTGGT CTACCGGCCG
GATCCGAACT GGGCCCTGCG CGGCCGGGTC GCCACGGGCT ACGCGACGCC GTCCTTCGCG
AGCCTGTTCG TGAACGCCAC CGGTCTGCCC GGAAACAACA CCGAGCTGAA GACGCAGGAG
AATCTCGGCT TCGATCTCGG CGCCGACTTC ATGCTCTTCG AGGGATTGAA GCTCAGCGTC
ACCGGCTTCT ACGAGTTCTT CCGCAACGAG TTCGTCACGC AGTCGCCGGG GGCGGGCCTG
CTGAACTACA CCTTCAACGC GCCGGCCTCC GAGCATCGCG GCATCGAGGT CGGGGCGGAC
TGGGCCTTCG CGCCAGGCTG GAACGGCCAG CTTGCCTACA CCTTCGACGA TCAGGTCTAC
ACCGACTACG TCGAGCAGAT CAGCGCCGGC AGCGTCACCG CCCAGTTCGA CCGCGCGGGC
CGCCGCATCC CCGGCGTACC GGCTCACCAG CTCCTGGCCC GCGTCGGCTA CGACGTCCCG
GCGGGGCCGC TGGCCGGGCT CGGCGGCTTC GCCGAAGTGG TGGCGCAGGA CAGCTACTTC
GTCGACAACG CCAACTTTCT GAAGGTGCCG GGCTTCGCGA TCCTGAACCT CAACGTCCAC
TACGCGGCGC CGCTTCCCAA CGGCGCCGCG AAACGGATCG ACCTCTACGC GGAGCTGCGC
AACGTCCTCG ACGCGACCTA TGTCGGGTCG GCCAACCCGC TGACGAACAC GATCAACGCG
ACGACCGGCG CCCAGAACGG CCGCGCCGTG CTCGCCGGCA CGACGGGCTC GATCTTCGCC
GGGCCGCCGC GGACCTTCGT GGCCGGGATG AAGCTGTCGT TCTGA
|
|---|
| Protein sequence | MPSRPAMRPA AWLLAAAPLA LSGAASAQTA SESVTLEELA VTGEGSAQGQ AGAGASGFGV
AALPGAAPLV IERPVSQVVT AVGREGTIAN RPATSIGTVL LDSPGVTLRQ GNGGRDVVIS
IRGNNARATG VTRNMVVLED GFPVTQPDGA SRFDLVDPRA YSRIDVFRGP QSALFGNYAT
GGALTFRTRT GREIDGYEIG VDAGSFGYLS HYFTVGRASG PFEVSLFASD VRGNGYQDNS
SYDTQTINLL ASYTPSPDNR FTLKVINNEL TANIPARSSL NQFRLNPYQR GCDAAASAAP
GCTTFGLFAN GAFGPRVPVT ATEGAFRRND RRTIIAGRWE HDIDAQTTWR VQVGFDERNY
NQPFYTTSGR GSLPSYFVQT DLTRRGELFG LPAVGYVALA YSTVDIAASV YNRAPYGGAR
LGALIGLQDT VQSNLGGRAR LELELAPQWT AVAGISAEQS SILGRNRTFA ISAAGTTSAV
ALADRSFLNV APELALVYRP DPNWALRGRV ATGYATPSFA SLFVNATGLP GNNTELKTQE
NLGFDLGADF MLFEGLKLSV TGFYEFFRNE FVTQSPGAGL LNYTFNAPAS EHRGIEVGAD
WAFAPGWNGQ LAYTFDDQVY TDYVEQISAG SVTAQFDRAG RRIPGVPAHQ LLARVGYDVP
AGPLAGLGGF AEVVAQDSYF VDNANFLKVP GFAILNLNVH YAAPLPNGAA KRIDLYAELR
NVLDATYVGS ANPLTNTINA TTGAQNGRAV LAGTTGSIFA GPPRTFVAGM KLSF
|
|---|
| |