| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_1658 |
|---|
| Symbol | trmE |
|---|
| ID | 6313333 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 1788761 |
|---|
| End bp | 1790095 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 642650382 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_001924357 |
|---|
| Protein GI | 188580912 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.844134 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.296272 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACG CCCTCCCCGT CCGTGAGGAG ACCATCTTCG CCCCGGCGAG CGGCTTCGGC
CGCGCGGCGG TGGCGGTGGT GCGCGTCAGC GGGCCGGCGG CGGGGCCGGC GCTCGATCAG
CTGGCCGGCG GACGTCCGGA GCCGCGCCGC CTCTCCCTGC GCCGCCTGCG CGATCCCGGG
ACCGGAAACA TCCTCGATCA GGCGCTCGTC GCGTGGCTGC CGGGCCCCGC CACCGCGACC
GGCGAGGACA TGGCCGAACT GCATCTCCAC GGCGGTCTTG CCGTGCGTGC CGCCGTACTC
CGGGCGCTGG GACGGGTGCC GGGATGCCGG CCGGCGGAGG CCGGAGCGTT CAGCCGCCGC
GCCTTCCTCA ACGGGCGGAT CGACCTGACC GAAGCCGAGG GCATCGCCGA TCTCATCGAC
GCCGAGACCG AGGCGCAGCG CGTCCAGGCC CTGCGCCAGC TCGACGGCGC CCTCGGCCGT
CAGGTCGCCG CGTGGCGCGA GACCGGCATC GAATTGCTCG CCGGCGCGGA GGCCGCCCTC
GACTTCGCCG ACGAGGGCGA TGTGGACGAG GACGGCCTCG ACGCCGCCCT CGCCGGCCGC
GCCGCGGCCC TGCGCGACGC GATCCGAGCG GCGCTGGCCG ACGGGCGCCG GGGAGAACGC
CTGCGCGAGG GTTTCTGCGT GGTGCTGGCC GGGGCACCCA ATGCTGGGAA ATCCACGCTG
CTCAACGCCC TGAGCGGGCG CGACGCCGCC ATCGTCTCGG ACATTCCGGG CACGACCCGC
GACGCCATCG AGGTGCGCTG CGATCTCGGC GGTCTGCCGG TGGTGCTGGT CGATACGGCG
GGCCTGCGGG AGACGGCGGA TGTGATCGAA GCGGAGGGCG TGAGGCGGAC GCACCACCGC
ATCCGCAGCG CCGACCTCGT GCTCCATCTT GTGCCGGCGG ATGGTGAGGC CGGCCCCGAA
GACTTTGCGG AGGTGCCCGT CCTGCGCGTC CGGACCAAGA GCGATCTTCC GTCCGGGGCG
CCGGGGGAGG GCGGCCTTGC CGTCTCCGCC GTGACCGGGG CCGGGCTCGA CGCCCTTCTC
GATGCCATCC AGGGATCGGC GGCGTCTGCC CTCGGCGGGG GTGATGCCCT CGTCACCCGC
GAACGGCACC GGGAGGCGCT GTCGCGGGCG GCCGGGCATC TCGACCGCGT CGCCACCGCC
CCCGCCGGCT TCCCGCCGGA ACTGGTCGCG GAGGATCTGC GATTGGCCGT CCGCGCGCTC
GGCGAGGTCG GCGGCCATGT CGGGGTCGAA GAAATGCTGG ACCGCCTCTT CGCCGGTTTT
TGCATCGGGA AATAG
|
|---|
| Protein sequence | MTDALPVREE TIFAPASGFG RAAVAVVRVS GPAAGPALDQ LAGGRPEPRR LSLRRLRDPG
TGNILDQALV AWLPGPATAT GEDMAELHLH GGLAVRAAVL RALGRVPGCR PAEAGAFSRR
AFLNGRIDLT EAEGIADLID AETEAQRVQA LRQLDGALGR QVAAWRETGI ELLAGAEAAL
DFADEGDVDE DGLDAALAGR AAALRDAIRA ALADGRRGER LREGFCVVLA GAPNAGKSTL
LNALSGRDAA IVSDIPGTTR DAIEVRCDLG GLPVVLVDTA GLRETADVIE AEGVRRTHHR
IRSADLVLHL VPADGEAGPE DFAEVPVLRV RTKSDLPSGA PGEGGLAVSA VTGAGLDALL
DAIQGSAASA LGGGDALVTR ERHREALSRA AGHLDRVATA PAGFPPELVA EDLRLAVRAL
GEVGGHVGVE EMLDRLFAGF CIGK
|
|---|
| |