Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpop_1601 |
Symbol | |
ID | 6312475 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium populi BJ001 |
Kingdom | Bacteria |
Replicon accession | NC_010725 |
Strand | - |
Start bp | 1729230 |
End bp | 1730393 |
Gene Length | 1164 bp |
Protein Length | 387 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 642650325 |
Product | succinyl-diaminopimelate desuccinylase |
Protein accession | YP_001924300 |
Protein GI | 188580855 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0549352 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTCCGACC AATCCCCCCT CGCCCTCGCC CATGCGCTGA TCCGCTGCCC CTCCGTCACC CCGGAGGAGG GCGGCGCACT GTCGTTCCTG GCGGAAAGGC TGACCGAGGC GGGCTTTTCC GTCGAGCGCC CGGTCTTTTC GGAGGCCGGC ACGCCGGACA TCGAGAACCT GTATGCCCGC ATCGGCACAG CGGGGCCGGT CCTCGTCTTT GCCGGCCATA CCGACGTGGT GCCTCCGGGC GAAGCGGCCT CCTGGACGCA CGGGCCGTTC TCCGGCGAGA TCACCGACGG CTTCCTCTAC GGCCGCGGCG CGGTGGACAT GAAGGGCGGC ATCGCCTGCA TGCTTGCCGC GACGCTCTCC TTCCTCGACC GCCATGGGCC GGATTTCGGC GGCTCCATCG CCTTCCTCAT CACCGGCGAC GAGGAGGGGC CGGCGGTCAA CGGCACGGTG AAGCTGCTCG ACTGGGCGAA GGCCAGGGGC GAGCGCTTCG ACCATTGCCT GCTCGGCGAG CCGACCAACC CCGACAGCCT CGGCGAGATG ATCAAGATCG GCCGGCGAGG CTCGCTCACG GGCCGCATCA CCGTGCACGG GCGCCAGGGC CACGTGGCCT ATCCGCACCG GGCCGAGAAC CCGATCCCCG GCCTGCTGCG CCTCGCCTCG GCGCTGATCG CCGAACCGCT CGACGGCGGC ACCGCGCATT TCGACGCCTC GAACCTCGAA TTCACGACGA TCGACGTCGG AAACCCCGCC ACCAACGTGA TCCCGGCCTC GGCCAAGGCC GTCTTCAACG TGCGCTTCAA CGACGACTGG ACCGCCGAGA CGCTCGGCGC CGAAATCCGG AAGCGCCTGG AGGCGGCGGC CGGCAACGCC GTGCGCTTCA GCCTCGACCT TCAGCCCTCG AACTCGCCGG CCTTCCTGAC CCAGCCCGAC GCCTTCGTCG ATCTCGTGGC GGATGCGATT GCAGCCGAGA CCGGACGGCG CCCGGCCCTC TCCACGACGG GCGGCACCTC GGATGCGCGC TTCATCAAGG ATGCCTGCCC GGTGATCGAG TTCGGCCTGG TCGGGCGGAC CATGCACGAG ACCGACGAGC GGGTGGCGGT GGCGGATCTC GACCGGCTCA CCGCGATCTA CGGGCGGGTG CTGGAGCGTT ATTTCTCGTC GTAA
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Protein sequence | MSDQSPLALA HALIRCPSVT PEEGGALSFL AERLTEAGFS VERPVFSEAG TPDIENLYAR IGTAGPVLVF AGHTDVVPPG EAASWTHGPF SGEITDGFLY GRGAVDMKGG IACMLAATLS FLDRHGPDFG GSIAFLITGD EEGPAVNGTV KLLDWAKARG ERFDHCLLGE PTNPDSLGEM IKIGRRGSLT GRITVHGRQG HVAYPHRAEN PIPGLLRLAS ALIAEPLDGG TAHFDASNLE FTTIDVGNPA TNVIPASAKA VFNVRFNDDW TAETLGAEIR KRLEAAAGNA VRFSLDLQPS NSPAFLTQPD AFVDLVADAI AAETGRRPAL STTGGTSDAR FIKDACPVIE FGLVGRTMHE TDERVAVADL DRLTAIYGRV LERYFSS
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