Gene Mpop_1601 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpop_1601 
Symbol 
ID6312475 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium populi BJ001 
KingdomBacteria 
Replicon accessionNC_010725 
Strand
Start bp1729230 
End bp1730393 
Gene Length1164 bp 
Protein Length387 aa 
Translation table11 
GC content70% 
IMG OID642650325 
Productsuccinyl-diaminopimelate desuccinylase 
Protein accessionYP_001924300 
Protein GI188580855 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
TIGRFAM ID[TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0549352 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCCGACC AATCCCCCCT CGCCCTCGCC CATGCGCTGA TCCGCTGCCC CTCCGTCACC 
CCGGAGGAGG GCGGCGCACT GTCGTTCCTG GCGGAAAGGC TGACCGAGGC GGGCTTTTCC
GTCGAGCGCC CGGTCTTTTC GGAGGCCGGC ACGCCGGACA TCGAGAACCT GTATGCCCGC
ATCGGCACAG CGGGGCCGGT CCTCGTCTTT GCCGGCCATA CCGACGTGGT GCCTCCGGGC
GAAGCGGCCT CCTGGACGCA CGGGCCGTTC TCCGGCGAGA TCACCGACGG CTTCCTCTAC
GGCCGCGGCG CGGTGGACAT GAAGGGCGGC ATCGCCTGCA TGCTTGCCGC GACGCTCTCC
TTCCTCGACC GCCATGGGCC GGATTTCGGC GGCTCCATCG CCTTCCTCAT CACCGGCGAC
GAGGAGGGGC CGGCGGTCAA CGGCACGGTG AAGCTGCTCG ACTGGGCGAA GGCCAGGGGC
GAGCGCTTCG ACCATTGCCT GCTCGGCGAG CCGACCAACC CCGACAGCCT CGGCGAGATG
ATCAAGATCG GCCGGCGAGG CTCGCTCACG GGCCGCATCA CCGTGCACGG GCGCCAGGGC
CACGTGGCCT ATCCGCACCG GGCCGAGAAC CCGATCCCCG GCCTGCTGCG CCTCGCCTCG
GCGCTGATCG CCGAACCGCT CGACGGCGGC ACCGCGCATT TCGACGCCTC GAACCTCGAA
TTCACGACGA TCGACGTCGG AAACCCCGCC ACCAACGTGA TCCCGGCCTC GGCCAAGGCC
GTCTTCAACG TGCGCTTCAA CGACGACTGG ACCGCCGAGA CGCTCGGCGC CGAAATCCGG
AAGCGCCTGG AGGCGGCGGC CGGCAACGCC GTGCGCTTCA GCCTCGACCT TCAGCCCTCG
AACTCGCCGG CCTTCCTGAC CCAGCCCGAC GCCTTCGTCG ATCTCGTGGC GGATGCGATT
GCAGCCGAGA CCGGACGGCG CCCGGCCCTC TCCACGACGG GCGGCACCTC GGATGCGCGC
TTCATCAAGG ATGCCTGCCC GGTGATCGAG TTCGGCCTGG TCGGGCGGAC CATGCACGAG
ACCGACGAGC GGGTGGCGGT GGCGGATCTC GACCGGCTCA CCGCGATCTA CGGGCGGGTG
CTGGAGCGTT ATTTCTCGTC GTAA
 
Protein sequence
MSDQSPLALA HALIRCPSVT PEEGGALSFL AERLTEAGFS VERPVFSEAG TPDIENLYAR 
IGTAGPVLVF AGHTDVVPPG EAASWTHGPF SGEITDGFLY GRGAVDMKGG IACMLAATLS
FLDRHGPDFG GSIAFLITGD EEGPAVNGTV KLLDWAKARG ERFDHCLLGE PTNPDSLGEM
IKIGRRGSLT GRITVHGRQG HVAYPHRAEN PIPGLLRLAS ALIAEPLDGG TAHFDASNLE
FTTIDVGNPA TNVIPASAKA VFNVRFNDDW TAETLGAEIR KRLEAAAGNA VRFSLDLQPS
NSPAFLTQPD AFVDLVADAI AAETGRRPAL STTGGTSDAR FIKDACPVIE FGLVGRTMHE
TDERVAVADL DRLTAIYGRV LERYFSS