| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_0098 |
|---|
| Symbol | |
|---|
| ID | 6310814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 104132 |
|---|
| End bp | 107284 |
|---|
| Gene Length | 3153 bp |
|---|
| Protein Length | 1050 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 642648809 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001922826 |
|---|
| Protein GI | 188579381 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGACA GCTTGGCCTT CCTGGCGGGC GGCGGCGAGG CCGCCCGCGT GATCCGCGCG
CGCGACTGGT CCGACCATCC CCTCGGCCGG CCCGAGACCT GGCCGACGGA GCTTCGTACG
GCGCTCAGCC TGGTGCTGAA CTCGCCGGAA TCGATGATCC TCGCCTGGGG TCCCGACCTC
ACCTTCTTCT TCAACGACAC GTATTTCCCG CTGCTCGGTC CGCGGCTCCC CTGGGCCATG
GGCGAGCGCT TCGACGTGGT CTGGGCAGAT GCCTGGTCCC AGGCCAAGCC GATCATCGAC
GACGCCTTCG CCGGCCGCAG CCGCCGCTTC GAGGACATGC CGTGGAAGCT CGGCACCGAC
CGCGGCCCGG CCGACACCTG GTTCTCGTTC TCCTACTCGC GCGTGCTCGA CGGCGACGGC
AGCGTCGCAG GCCTCTTCAT CTTCACCAAT GAAACCACAG CGCGGGTCCT GGGCGACCGG
GCGCTGCGCG AGAGCGAGGA GCACTTCCGG CAGACGGTCG AGCTCAACCC GCAGGTGCCG
TGGACGGCCG ACCCCCACGG CAACATCATC TCCTACTCGC ATCGCTGGCT CGAACTGACG
GGCCAGGCCC CGGGGGAGCC GGACGGCGCA GGCTGGACCA AGGCGCTGCA CCCGGAGGAC
CTGGAGCCGA CGATGGCGGC ATTCGCGGTC GCGCTGTCCT CAGGCGACCC GGTCGACATC
GACTACCGCA TCCGCATCGC CGCCACGGGC GAGTACCGCT GGCAGCGGGC CCGCGCCCAC
CCGCGCCGGG ACGAGGCCGG CACGATCATC CGCTGGTACG GCGTCGTCGA GGATGTCCAC
GACCGGAAGA TCGCCGAGGC AGCCCTACGC AGGAGCGAGG AGGAGCTGCG CCTCGTGGTC
GAGAGCGCCC GGGACCACGT CATCCTCACC ACCGACACAG ACGGCATCAT CACGCGCTGG
TCGGCCGGTG CGCAGGCGGT CCTCGGCTGG TCGCCCGAGG AGGCGGTCGG GAAGCCCGCC
GTCATCACCT TCACGCCGGA GGACCGCGAC AGGGGCGCCG ACCTGCGCGA GATGGCCACC
GCGGCGCGCA ACGGCTGCGC CGGCGACGAG CGCTGGCACG TCGCCAAGGA TGGCCGGCGC
GTCTTCCTGA ACGGCTCCTC CCATCCGCTG CCGCCGGATC CCCAAGGACG TCCGCGCGGC
TTCCTGAAAC TCGCCCGCGA CGAGACCGGC CGCATCCGGG CCGAGGAGGC GCTGCGCGCG
AGCGAGGTCC AACTGCGCCT CGTCGCCGAC GCGCTGCCCC TCCTGGTGTC CTTTGTCGAC
CGATCGCTGA CCTACCGGTT CGCGAACGCG GCCTACCGCG ACTGGTTCGA CCGCAAGCCC
GAGGAGGTCG TCGGACGCAC CATCCCCGAC CTAGTCGACG AGGCGGGCTT ACGAGCCCGG
CTGCCGTACA TCGAGCGGGC GCTGGCCGGC ACGCCGGTTC GCACGGACCT ACCCTGGCCA
TGGCCGGACG GAAGGCGCCG CATCGCCGAC ATCCGCTACG AGCCGCGCCG GGACGCGAGG
GGCGCGGTCG ACGGGTTCTA CGTGTTCGTG CAGGACGTCA CCGCCCAGCG CGACGCCGAG
GCGGGGCTCG CCGCCGAGCG CGATCGTCTC TGGGAGCTCA GCGAGGACCT GCTCGTCAAC
GCCGACTACG AGGGCCACCT TCTCCGGATC AGCCCCTCCT GGACGATCCT GCTGGGCCAC
GACGCGGAAA CCCTGCTGAC GCGGCCCTAC GGCGAGATCG TCCATCCCGA GGACTTCCCG
GTCGTGATGG AGGCGCTCCT CGACATGCGG ACCACGGGCA GGCCTGTCCG CGTCGAGAAC
CGCGTCAGGG CGGCGGACGA GACGTGGCGC TGGATCGCCT GGAAGCTGGC GCCGGAGCCC
GGCGGAGAGC GGCTGACCGG CGTCGGCCGC GACATCACCG CCGAGAAGGC GGCAGCCGAG
GAGAAGGCGC GGCTCGAAGA GCAGCTGCGG CAATCGCAGA AGATGGAGGC GGTCGGCCAG
CTCACGGGCG GCATCGCCCA CGACTTCAAC AACCTGCTGG CCGGCATCTC GGGCTCGCTG
GAGCTGATGC AGACACGCAT GAGCCAGGGC CGGCTCAAGG ACATCGACCG CTACATGTCC
GCCGCGCAGG GCGCCTCAAA GCGCGCGGCC GCGCTCACCC ATCGCCTGCT CGCCTTCTCG
CGCCGGCAGA CACTCGACCC GAAGCCGACC GACGTGAACG TCCTCGTCCG CGGCATGGAG
GAGCTGATCC GGCGCACCGT CGGCCCCGCC ATCGCGGTCG AGGTGGTTGG CGCCTCGGGC
CTGTGGCCGG CGCTGGTCGA CCCGCCGCAG CTGGAGAACG CGCTGCTGAA CCTCTGCATC
AACGCCCGCG ACGCCATGCC CGAGCGCGGG CGCATCACGG TCGAGACCGC CAACAGGTGG
CTCGACGAGC ATGCCGCCCG CAAGCACGAC ATCCCGCCGG GCCAGTACCT GTCGCTCTGC
GTCACCGATA CGGGCACCGG GATGAGCCCG GAGGTCGTCG CCAAGGCGTT CGACCCGTTC
TTCACCACCA AGCCGATCGG TCAGGGGACC GGGCTTGGCC TCTCCATGAT CTACGGCTTC
GCCAAGCAAT CGGGGGGGCA GGTGCGGATC TACTCGGAGG TCGGCCTCGG CACGACAGTG
TGCCTATACC TGCCGCGCTA TCACGGGGCG GTGGAGGAGT TCGATCCGCT CGCGCGGCTT
GCCGACGCCC CCCGGGCCGA GCAGGGCGAG ACGGTGCTGG TGGTGGACGA CGAGCCGACC
GTTCGGATGC TGGTGACCGA GGTGCTGGAG GATCTCGGCT ACACGGCGAT CGAGGCGGCC
GACAGCGCCT CGGGTCTGAA GGTCCTGCAG TCGGGCGTGC GCATCGACCT GCTCATCACC
GACGTGGGCC TTCCGGGCGG CATGAACGGG CGCCAGATGG CCGACGCCGG CCGCGAGACG
CGCCCGGATC TCAAGGTGCT CTTCATCACC GGTTACGCCG AGAACGCGGC GGTGGGCAAC
GGGCACCTGG AGCCCGGCAT GGAAGTGCTG ACCAAGCCCT TCGTCGTCGA AGCCCTCGGC
GTGCGCATCC GCGAGATGAT CGCACATGGT TGA
|
|---|
| Protein sequence | MSDSLAFLAG GGEAARVIRA RDWSDHPLGR PETWPTELRT ALSLVLNSPE SMILAWGPDL
TFFFNDTYFP LLGPRLPWAM GERFDVVWAD AWSQAKPIID DAFAGRSRRF EDMPWKLGTD
RGPADTWFSF SYSRVLDGDG SVAGLFIFTN ETTARVLGDR ALRESEEHFR QTVELNPQVP
WTADPHGNII SYSHRWLELT GQAPGEPDGA GWTKALHPED LEPTMAAFAV ALSSGDPVDI
DYRIRIAATG EYRWQRARAH PRRDEAGTII RWYGVVEDVH DRKIAEAALR RSEEELRLVV
ESARDHVILT TDTDGIITRW SAGAQAVLGW SPEEAVGKPA VITFTPEDRD RGADLREMAT
AARNGCAGDE RWHVAKDGRR VFLNGSSHPL PPDPQGRPRG FLKLARDETG RIRAEEALRA
SEVQLRLVAD ALPLLVSFVD RSLTYRFANA AYRDWFDRKP EEVVGRTIPD LVDEAGLRAR
LPYIERALAG TPVRTDLPWP WPDGRRRIAD IRYEPRRDAR GAVDGFYVFV QDVTAQRDAE
AGLAAERDRL WELSEDLLVN ADYEGHLLRI SPSWTILLGH DAETLLTRPY GEIVHPEDFP
VVMEALLDMR TTGRPVRVEN RVRAADETWR WIAWKLAPEP GGERLTGVGR DITAEKAAAE
EKARLEEQLR QSQKMEAVGQ LTGGIAHDFN NLLAGISGSL ELMQTRMSQG RLKDIDRYMS
AAQGASKRAA ALTHRLLAFS RRQTLDPKPT DVNVLVRGME ELIRRTVGPA IAVEVVGASG
LWPALVDPPQ LENALLNLCI NARDAMPERG RITVETANRW LDEHAARKHD IPPGQYLSLC
VTDTGTGMSP EVVAKAFDPF FTTKPIGQGT GLGLSMIYGF AKQSGGQVRI YSEVGLGTTV
CLYLPRYHGA VEEFDPLARL ADAPRAEQGE TVLVVDDEPT VRMLVTEVLE DLGYTAIEAA
DSASGLKVLQ SGVRIDLLIT DVGLPGGMNG RQMADAGRET RPDLKVLFIT GYAENAAVGN
GHLEPGMEVL TKPFVVEALG VRIREMIAHG
|
|---|
| |