| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_0089 |
|---|
| Symbol | |
|---|
| ID | 6310623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 91288 |
|---|
| End bp | 92511 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642648801 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001922818 |
|---|
| Protein GI | 188579373 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.181863 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTCG CCTTCACCGC CCCACCGCCA CCGGCTTGGC GCCTCGTCGC ATGGCTGACC
ACCTCGCCTG AGCAGGTTCC TCCGGACGTG CTCACCATCC TGCGCGGGCG CCTCGTCGTC
GGGGTCGCGC CCCTGATCGT GGCCGCCGTC GTGGGAGCCG CGCTGGCTAG TCTCGCGATC
CTACGCGTTC CGACGCTAGC CATGCTCGCG TGGTTCTGCG CTGACCTGAC CCTCACGCTC
GCGCGCCTCA CGACCATGCT GGTGATGCGG CACAACCTCC GCAATGCGGG TCAGCGCTCA
GGCGGGATGC TCCCGCTCAC GGATCTGTAC GTGCTCAGCT CCATGCTCTG GTGTGCCCAG
ATCGGCTGCG GGGTCGGGCT CTGCATGGCC TCGGGCGATC CGGTGCTGGT GCCGTTCGCC
TGCCTTGCCA CGACGGGACT GGTGGGTGGG TTGGCAGCCC GCAATCCCGG GGCACCGCGC
ATGACCCTGG TCCAGATGAT CAGCGTCGTC GTGCCCTTCA TGGCCGGGGC GATCGCGGGC
GGCCAGCCAT GGTTCCTGCC CCTCTGCGCG CTGGCGCCGC TCTACCTGGT GGCGGTCGCG
GCCGTGAACA GGCGATTGCA CGCCGATTAC GTGGCGCTGC TGTGCGCCGA GCGGGCCCTG
CGCCACCAGG CGCTCCATTG CGGCCTCACC GGCTTGCCCA ACCGCACCTC CTTCGATCAG
GCCCTGACTG CCGCATCGGC GGGTCGGAAC GATGATGAAG ATCATGCGGT GGCCCTGCTC
TACCTCGACC TGGACGGCTT CAAGGCCGTG AACGACACCT ACGGTCACGC GACGGGCGAC
ACTCTCTTGC AGCAGGTCGC GCGCCGCCTG CGCGACGTGG TCATGGCCGC CGACGTGGTC
GCCCGTCTCG GCGGGGACGA GTTTGCCGTG TTGCTCACCG GGCGGCGGGC CGCCTCTGCC
GAGAGGGTGG CAGGCGCGAT CATCGCGGCC GTGGGTCTGC CCTACGACCT AGGCCACGGT
ACACTCATCA GCATCGGGGT CAGCGTCGGT ATCGCCGAGA CCGACGCTTG CAGCTCCGAT
AGCCATGCGC TCCTCGTGCG AGCGGATCGG GCTCTGTACA CAGCCAAAGA GCGGGGCAAG
GGGACCTTCC ATCGCGCTCG CCCCGCCAGG AGCGGTGGCC GCCTTACGAC AAAGATAACA
GTGGAGTGCG AAGCCGCCGG ATAA
|
|---|
| Protein sequence | MAFAFTAPPP PAWRLVAWLT TSPEQVPPDV LTILRGRLVV GVAPLIVAAV VGAALASLAI
LRVPTLAMLA WFCADLTLTL ARLTTMLVMR HNLRNAGQRS GGMLPLTDLY VLSSMLWCAQ
IGCGVGLCMA SGDPVLVPFA CLATTGLVGG LAARNPGAPR MTLVQMISVV VPFMAGAIAG
GQPWFLPLCA LAPLYLVAVA AVNRRLHADY VALLCAERAL RHQALHCGLT GLPNRTSFDQ
ALTAASAGRN DDEDHAVALL YLDLDGFKAV NDTYGHATGD TLLQQVARRL RDVVMAADVV
ARLGGDEFAV LLTGRRAASA ERVAGAIIAA VGLPYDLGHG TLISIGVSVG IAETDACSSD
SHALLVRADR ALYTAKERGK GTFHRARPAR SGGRLTTKIT VECEAAG
|
|---|
| |