| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nther_2497 |
|---|
| Symbol | |
|---|
| ID | 6316390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010718 |
|---|
| Strand | + |
|---|
| Start bp | 2687985 |
|---|
| End bp | 2689826 |
|---|
| Gene Length | 1842 bp |
|---|
| Protein Length | 613 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 642644883 |
|---|
| Product | polysaccharide biosynthesis protein CapD |
|---|
| Protein accession | YP_001918648 |
|---|
| Protein GI | 188587103 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.495773 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCAA AATACATAAA AAGAGGAATC CAGGTCCTAG TAGATATGTA TCTGTTCAAC
CTGGCCTTTA TCATGGCACT ATTGTTTAGA TTCGATGGTT TTGTCCCGGA AGAATACTTG
ATTATGTATC AGGATAGTTT CTGGTGGATA ACGGCAGTAT TCATTCTCAC TTGTATAGTC
TTTCGGCTGT ATCACAGATT GTGGTCTTAT GCCAGTATTC ACGATGTGAT AGTCCTGGGA
ACAGCCATCA CCATCGGTTC CATTTCCGTT TATGCAGCTA CTGTTGCTTT AGACATGATG
TTTCCCAGAA GCATTTATCT TATCTCCTTA TTTTTGAACC TGGTATTTCT CGGAGGATAT
CGGCTGGGCT TTCGAGTCCT CAATATATAT AAACGGTTTG GCTTGAGTCC TCTAAAAAAG
CAAAAACCCA AAAATAGAAA AAACGTACTA ATAGTAGGTG CTGGAGATGC CGGCAATATG
GCTCTAAAGG AATTAAACCA ACACCAGCTA GACCTCTCAG TAAATATTGT TGGTTTTTTG
GATGATGACC AGGAAAAACA GGGTTGTCGT GTGAACGGAG TCAAAGTTCT AGGTTCTACC
GATGAACTTG TTAAAATCTC CAAGAAAAAA GATGTAGACG AAGTTGTAAT TGCCATGCCT
TCAGCTCCTC AACAGGTGAT TCGCTATCTC ATAAAAACTT GTAGCGATTA TTCTATTAAA
ACTAAGATTA TACCCGCTGT TCATGACTTA ATTTCTGGTA GGGTTTCTAT CAATCATTTA
AGAGAAGTAG AAATCGAAGA CCTTTTGAAA AGGGATCCCA TCGAACTGGA TATAAATCAA
ATTGCCGGTT ATTTAACTAA TAAAGTGGTC TTGGTTACAG GGGCCGGAGG CTCCATCGGT
TCGGAACTCG TCAGGCAGAT TGCCAACTTT AATCCTCAAA CTATATTACT TTTAGGACAC
GGTGAAAACA GTATTTTCGA AATTTATAGA GAAATGGTAG AAAAATTTCC TAAAAATAGA
TTGGTACCCA TCATTGCCGA TGTTAAAGAC AGGGAAAAAA TATTTCAAAT CGCCAAAGAT
TACGAGCCCG ATGTAGTATT TCACGCCGCC GCACATAAAC ACGTGCCATT AATGGAACAA
AATCCAGAAG AAGCCATTAA AAACAATATC TACGGCACAA AAAACCTGGT AGATGCAGCT
CATCACCATA AATCCCAGCG CTTTGTATTG GTTTCCACAG ATAAAGCCGT TAACCCCACT
AGTGTCATGG GAGCTACTAA ACGAGTTGCA GAACTAATCG TAGAAAACAT GGCTCAAACA
AGTGAAACCA AATATACAGC TGTCAGGTTT GGTAATGTCT TGGGAAGCAG AGGTAGTGTG
ATACCTCACT TTAAGGAACA GATCAGTAAA GGTGGGCCAG TCACAATTAC CCACCCCGAA
ATGACAAGAT ACTTCATGAC AATTCCTGAA GCTTCCCAGT TAGTCATAGA GGCCGGAGGA
ATGAGTAAAG GCGGAGAGAT TTATGTACTA GATATGGGGC AACCGGTAAA AATTGTTGAC
CTGGCAAAAG ATCTAATCAA ATTGTCCGGG CTGGAGCCGG AAAAGGATAT TAAATTAAGC
TATACCGGAA TAAGGCCTGG AGAAAAACTC TACGAAGAAC TCCTGACAGA AAAGGAAAAT
GTCTCCAAGA CAAAACATGA CAAAATTTAC ATCACTGACA ATACGGTTTC CGATACAAAT
GAAATGAAAA AAGAACTACA TGCCATGGAG GAAATAATAG CTGCAGATTT AACTTTCTTA
GAAAAACAGC TCCTACAAGA ATCGAAAACT GGAACTGAAT AG
|
|---|
| Protein sequence | MTAKYIKRGI QVLVDMYLFN LAFIMALLFR FDGFVPEEYL IMYQDSFWWI TAVFILTCIV
FRLYHRLWSY ASIHDVIVLG TAITIGSISV YAATVALDMM FPRSIYLISL FLNLVFLGGY
RLGFRVLNIY KRFGLSPLKK QKPKNRKNVL IVGAGDAGNM ALKELNQHQL DLSVNIVGFL
DDDQEKQGCR VNGVKVLGST DELVKISKKK DVDEVVIAMP SAPQQVIRYL IKTCSDYSIK
TKIIPAVHDL ISGRVSINHL REVEIEDLLK RDPIELDINQ IAGYLTNKVV LVTGAGGSIG
SELVRQIANF NPQTILLLGH GENSIFEIYR EMVEKFPKNR LVPIIADVKD REKIFQIAKD
YEPDVVFHAA AHKHVPLMEQ NPEEAIKNNI YGTKNLVDAA HHHKSQRFVL VSTDKAVNPT
SVMGATKRVA ELIVENMAQT SETKYTAVRF GNVLGSRGSV IPHFKEQISK GGPVTITHPE
MTRYFMTIPE ASQLVIEAGG MSKGGEIYVL DMGQPVKIVD LAKDLIKLSG LEPEKDIKLS
YTGIRPGEKL YEELLTEKEN VSKTKHDKIY ITDNTVSDTN EMKKELHAME EIIAADLTFL
EKQLLQESKT GTE
|
|---|
| |