| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nther_2298 |
|---|
| Symbol | |
|---|
| ID | 6314455 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010718 |
|---|
| Strand | + |
|---|
| Start bp | 2442980 |
|---|
| End bp | 2444098 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 642644686 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_001918452 |
|---|
| Protein GI | 188586907 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00169633 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 82 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTGC CAAAATTTAC GTTGTTAATC ATTACTATGT TAGCACTTCT GACAGTCTCT
GCTAATCTAG TAGATCCCCC GATCACAGAA GCTGCCACAA AACAGAGTAC TCAGAACCAG
GGAGGCGTGG TTGAACAGAT CCACATCGTA GTAGACGACA CAGCTTTAGA GACACCAGGT
AGATTGCAAA ATGGTAGAAC TATGGTACCG CTAAGGGGCG TTTTTGAACA GGTTGGAGCC
AGCGTCAACT GGGACAGTGA AGAGGAGATT ATCACCATTA TCAAAGATTG GGATAGATTA
GAATTAAGCC CTGGTACTAA AAAAGCTGAA AAAAATTATG ATGAAATAAT AAAATTGGAA
GAGGCACCAT TCACCAGTAG GGGAACTACC TGGCTCCCCT TGAGAGCCAT TGGAGAATTG
TTCGACTTAG ATGTAGATTG GGTTAGTGAG CACGATTTAG TAAGGATTAG TACAGGTGAA
CAAGAAAAAG ATATTGGAAA AATTGCTGAA GATTTAAAAC CAATTGAGAC AGATCAAAGT
GGTAAAGTTG TCTACTTAAC CTTCGATGAT GGTCCCAGTC ATATTACACC TGAAGTTTTG
GATATCCTGG ACGAGTACAA TGCCAGGGCA ACTTTTTTCG TGATTGGTCA ACAGGCGGAA
GCCATGCCAC ATATTATTCG AAGAATCCAC AATGAAGGCC ATCTAATTGC TAATCACAGT
TATACCCACG ATTATGATAA AGTTTACGAT TCTCCCGAAT CCTTTGAAGA GGAATTATTA
AAAACGGAGG AAGTAATCAA AGATATCACA GGGAAAAGAA CCACAATATT TCGACCACCG
GGTGGAGAAC ATCCTAATAT GACCGATGAA AAAAGAGAAA TTCTACAAGA ACACGGCTAC
ACCTTATATA ACTGGAGTGT GTCGGCTGGA GATACTGCCA CTCCTACGCC AAGCTCTGAA
GTTATAAAAA ATAATGTACT GGGTGGAGTG CGAGGCAGTA ATGGAGCTGT TGTATTGATG
CACGATTCAG CAAGTAGAGA AAACACTAAA AAAGCCCTCT CAGAAATTCT GAGAGAGCTC
AGCTTCGAAG GTTATAGTTT CCCCACCTTA CCACAATAA
|
|---|
| Protein sequence | MKLPKFTLLI ITMLALLTVS ANLVDPPITE AATKQSTQNQ GGVVEQIHIV VDDTALETPG
RLQNGRTMVP LRGVFEQVGA SVNWDSEEEI ITIIKDWDRL ELSPGTKKAE KNYDEIIKLE
EAPFTSRGTT WLPLRAIGEL FDLDVDWVSE HDLVRISTGE QEKDIGKIAE DLKPIETDQS
GKVVYLTFDD GPSHITPEVL DILDEYNARA TFFVIGQQAE AMPHIIRRIH NEGHLIANHS
YTHDYDKVYD SPESFEEELL KTEEVIKDIT GKRTTIFRPP GGEHPNMTDE KREILQEHGY
TLYNWSVSAG DTATPTPSSE VIKNNVLGGV RGSNGAVVLM HDSASRENTK KALSEILREL
SFEGYSFPTL PQ
|
|---|
| |