Gene Nther_2162 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNther_2162 
Symbol 
ID6316026 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNatranaerobius thermophilus JW/NM-WN-LF 
KingdomBacteria 
Replicon accessionNC_010718 
Strand
Start bp2288892 
End bp2290568 
Gene Length1677 bp 
Protein Length558 aa 
Translation table11 
GC content37% 
IMG OID642644549 
Productputative sigma54 specific transcriptional regulator 
Protein accessionYP_001918316 
Protein GI188586771 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.000345974 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGGGAAGTT ATCAAAAGAA TTTAAATGAC AACCTAAATG ATAGGGATAG CAACACTTTT 
GAAAGTTTAG CCAAGAGCTT ACCCCTTTTG GCTAAAGTGA TTGGTGGTTA TGCCACTATT
ACTGACAAAA AAGGGGTCAG GCTGAAGGTT ATTGATTCCA ATGGGAAGCA GCTAGAGCAC
CTGGAAGACC TACAGTATGA GTTAGCCAGG GAAGCTGCTA AAAAAGGGGA AGCAGTCTAC
GGTAATAGCC AGCTAAAACA TAATGCTGAA GCTTGGTGTC TACCAGTTGG CGATTATGTG
CTCTGCTGCA GTAAGGCGGA AGTGGCAGAA CGAAACAGGA ATCTTGAAGA AGCTTTATTG
GCATCTTTAC CTTATATTGC AAAAGTAGCA GGGGGACAAG CCGTCCTCTT TGATGATGAA
GGAAAAAGAC TTAATGCAGT TAATTCCAAG GGAGATGTCA ACAATCAATT ACTTGGCAAA
GTTAGTGAAG CCGCCAAGGA ATGTATGAAA GCTCAAAAGC CTGTACTGGG GAAATCTACT
TTTATCAGTG GTGCCAGTGC TGTTAGGATT CCCATTACTA AGGAAATTGG ATTTGGATTT
AATAATGAAG ATACAGCTCT TAAAAATCAA AAGCTTTTAG AAGAAGTTAA AAAATATCAG
ACTGCTAAAT ACAATTTTAC TGACATAATT GGTGAAAGTC AGCAGATGAG AAAAGCTAAA
GAATTGGGAG AAGCTGCTGC CAGTTCCGAT TCAAGTGTAC TAATTTGCGG TGAGACAGGT
ACTGGTAAAG AATTATTTGC CCAATCAATT CACAATGCAA GCTATAGATG CAGTAAACCT
TTTATAGCTA TTAATTGTGC TGCACTTCCG CCATCATTGA TCGAGAGTAA TTTATTCGGT
TATGTGGAAG GAGCTTTTAC TGGCGCTAAA AAAGGTGGAG CTACTGGAGT TTTTGAAAAA
GCTAATAATG GAACTTTATT TTTGGACGAA ATTAGCGAAA TGGACTTGGA TCTACAGTCA
AAATTATTGC GGGTATTACA AGAAAAAGAA GTCACTAGAA TTGGTGGTCG CAAGGTAATT
CCCTTAAACC TACGAATAAT TGCAGCTACT AACAGGAACT TGGAAGACAT GATTCAAAAG
GGACAGTTTA GACGAGATTT ATTTTTTAGA TTAAATGTAA TAGAAGTTAA ATTACCACCA
TTAAGAGATA TGAAAGAAGA TATCCCCTTG CTTGTTAATG AAACAATTAT TAAAATGAAT
TCGATTTTCG GTAAGGCCAT TAAGGGTGTC GACAAAGAAG CGCTGGAAAT GCTGATAAAT
TATGATTGGC CTGGAAATGT ACGAGAATTA TATAACTGTA TAGAAAGAGC TTTTAATCTG
ATTGGTGATG ATAATTACAT TAGAAAAAAG CATTTAAACT TTAAATTTAA TAATGGCAAT
GGTATTACAG CCCAGAATTA CATGGAGGAA ATAGAAGATA CCGAAGGTAA TCCAATTAAT
CTAGATAATG ATACAGGACA AAGAAGTCTC GATGATATAG TTGCTAATTA CGAAAAACAA
GTAATTGAGG CAGTGTTGAA AGAAGTTAAA GGAATTAGGG CCAAAGCTGC CAAAAGATTA
AATATAAGTC CGGCTACATT GTGGAGAAAA ATGAAAAAGT TAAATATTGA GGGTTAA
 
Protein sequence
MGSYQKNLND NLNDRDSNTF ESLAKSLPLL AKVIGGYATI TDKKGVRLKV IDSNGKQLEH 
LEDLQYELAR EAAKKGEAVY GNSQLKHNAE AWCLPVGDYV LCCSKAEVAE RNRNLEEALL
ASLPYIAKVA GGQAVLFDDE GKRLNAVNSK GDVNNQLLGK VSEAAKECMK AQKPVLGKST
FISGASAVRI PITKEIGFGF NNEDTALKNQ KLLEEVKKYQ TAKYNFTDII GESQQMRKAK
ELGEAAASSD SSVLICGETG TGKELFAQSI HNASYRCSKP FIAINCAALP PSLIESNLFG
YVEGAFTGAK KGGATGVFEK ANNGTLFLDE ISEMDLDLQS KLLRVLQEKE VTRIGGRKVI
PLNLRIIAAT NRNLEDMIQK GQFRRDLFFR LNVIEVKLPP LRDMKEDIPL LVNETIIKMN
SIFGKAIKGV DKEALEMLIN YDWPGNVREL YNCIERAFNL IGDDNYIRKK HLNFKFNNGN
GITAQNYMEE IEDTEGNPIN LDNDTGQRSL DDIVANYEKQ VIEAVLKEVK GIRAKAAKRL
NISPATLWRK MKKLNIEG