| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nther_1939 |
|---|
| Symbol | |
|---|
| ID | 6315851 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010718 |
|---|
| Strand | - |
|---|
| Start bp | 2042587 |
|---|
| End bp | 2044161 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 642644321 |
|---|
| Product | Outer membrane protein-like protein |
|---|
| Protein accession | YP_001918098 |
|---|
| Protein GI | 188586553 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000000126672 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 61 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAGAT TTAAGCAAAT TGCTTCAGTA ATGATTACTG TTGTACTTGT ATTTAATCCT
ATTCTAAGTT TTTTTTCAAA TAATGAAAAA GTCTTAGAAG CTTCAGAAGA AACGAATGTT
CAGGAAGAAA ATGTAAAAGA ACTAGATATT ACAAAAGCTA GAGAACTGGC TCTAGAAAAC
TCACCTGAAG CACAGAAAAT AAGAATACAA CTTAAGCAAC TAGTTGTTGG TGTAGATATG
GCTGAAGACA GACATAATCA ATTAGAAGAC CTTCAAGATG ATATCAAGAA CTTAGAAGAT
ACCTTGTTGG ACATTGATCC TGATTTTGAT GAAGCCGAAG AAATCTTTAA GAATATGATG
ATAGAAATCT TTAGCCAAAT TGACGAGATT GATATAGAAG ATAGTGAAGC ACCTTTTCCT
AATGGTAATG AATTTAATGA AATAGATTTT GAATATGAAG ATGAAATAAA AGATGCAGTG
AGTGAATTAT TTGCTCATAT TGAAGACGGC TGGAATAATT ACTTAGATGA TGTAGAACAG
GCCTTTGATG ATGTCGACTA TGAAGACGGT TTAGATGATT TAATTTTAGA GGTTGAACAA
AAAAAGAGGG AGCTAGAACA ACAAAAAGAT TTAGCAGAGC TTAAATGGCA ACAAGGACAA
GAAAAAATTA TGTTTCAAGC CGAAGCCCTT TACACTGGTT TACTAATGAT GGAAGAAGCT
CTGGATTATA TGGATGAGGC TATGGAGCTT ATGTATGAAC AAGTAGGTGA AATTAAGGCT
AAACGTGAAG TAGGAGAATC TGTAGACCTA GAGCTAGATG CTGCTAAATT AGAAAAAGAA
CAACTAAAAC AAGAACAGCA GTCTTTGGAA AATCAGTATA GAGACCTTAA GAGGCAGTTT
TCCAGGTTAC TTGGTCAACC CTTGAATACG GAATATCATT TAGAACCAAT CCATGCCGAA
ATGGAAGATT ATGATATTAA TGAATTAATA GATAAATTGT TAGGCCATGG AAAAGAGATA
GAAATTGCCG AACAAGAATT AGAATTTGCT AAGGACAACT TGGAGTGGAT GGAAGATAAT
CATGGAAAAA ACTCCCTTGA ATGTGAAATG GCTGAACTTG AACTGCAAAT GTCAGAACTA
AATTACAATG ATACTCGAGT TTCAATGGAA AAAGTTATGA GAAATGTTTA CGATGAATAT
AAAGAGACTA AATCTCAATA TAATCTTTCA GAAGATGCAC TTCAAGTACA AGAAGATTTT
TTTGAAGGTA TTTTAATTCA AGAAGAATTG GGAATGGTCT CTGATTTAGA AACCCTAGAA
GGAGAAATAG AAACAGAAGA AGTGAAAATG ATGAACAACT TATCCGATTT ACAACTTTTC
CTTGCAGAAA GACAGTTAGA ATTAGTTTCT GAAGGGTTTT TAACTGAAAA CATTTTAGAT
CAAATAAATT TAGACGAAGA CTCCCTAGAA GGTAATGGTT TTAGAAATGA TATGAACGAT
AATGATCCAG CTCAAAACGA TGGTTTAAAT AATAATGGAT TTGACAGTAA TGGCGATGGG
TTCAGAAAAA ATTAG
|
|---|
| Protein sequence | MRRFKQIASV MITVVLVFNP ILSFFSNNEK VLEASEETNV QEENVKELDI TKARELALEN
SPEAQKIRIQ LKQLVVGVDM AEDRHNQLED LQDDIKNLED TLLDIDPDFD EAEEIFKNMM
IEIFSQIDEI DIEDSEAPFP NGNEFNEIDF EYEDEIKDAV SELFAHIEDG WNNYLDDVEQ
AFDDVDYEDG LDDLILEVEQ KKRELEQQKD LAELKWQQGQ EKIMFQAEAL YTGLLMMEEA
LDYMDEAMEL MYEQVGEIKA KREVGESVDL ELDAAKLEKE QLKQEQQSLE NQYRDLKRQF
SRLLGQPLNT EYHLEPIHAE MEDYDINELI DKLLGHGKEI EIAEQELEFA KDNLEWMEDN
HGKNSLECEM AELELQMSEL NYNDTRVSME KVMRNVYDEY KETKSQYNLS EDALQVQEDF
FEGILIQEEL GMVSDLETLE GEIETEEVKM MNNLSDLQLF LAERQLELVS EGFLTENILD
QINLDEDSLE GNGFRNDMND NDPAQNDGLN NNGFDSNGDG FRKN
|
|---|
| |