Gene Nther_1406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNther_1406 
Symbol 
ID6315738 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNatranaerobius thermophilus JW/NM-WN-LF 
KingdomBacteria 
Replicon accessionNC_010718 
Strand
Start bp1476392 
End bp1477660 
Gene Length1269 bp 
Protein Length422 aa 
Translation table11 
GC content40% 
IMG OID642643786 
ProductCheC, inhibitor of MCP methylation / FliN fusion protein 
Protein accessionYP_001917577 
Protein GI188586032 
COG category[N] Cell motility
[T] Signal transduction mechanisms
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1776] Chemotaxis protein CheC, inhibitor of MCP methylation
[COG1886] Flagellar motor switch/type III secretory pathway protein 
TIGRFAM ID[TIGR02480] flagellar motor switch protein FliN 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.545677 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGAGAATA ATAAAGATAT CTTGTCCCAA GAAGAAATTG ATGCTCTGTT AAAAGGATCA 
GGCGACGATG ATAGTGGCGA TGATGGAGAT AACCATGGTG GTAGTGGCGG CAGCGGATCA
GGTAACGATG GCAATGGAGG TAATGGAAAT AATGGAGATA ATGGTGATAA TTCTTTAAAT
GAAACTGAAA AGGATACCGT TGGTGAAATT GGAAACATTT CCATGGGGAC TGCTGCTACT
ACCTTATCAG TACTACTTAA TCAGAAAGTA TCTATAACTA CTCCAAGAGT TGAAGTGACA
GACTATGCCA CTTTAAGAGA AGAATTTCCT AAACCTCATG TAGCAGTAGA AGTGGAATAC
TTGGAGGGGC TTGAAGGAAT TAATGTATTA ATCCTAAAAC AAGAGGATGC AAAAATGATT
GCCAATTTAA TGATGGGTGG CGACGGTACA GATATTGCTG AAGGTGAAAT CGAGGAATTT
CACTTAAGTG CTGTAGGAGA AGCCATGAAT CAGATGATGG GCTCGGCCTC GACTTCCATG
TCTGATATGT TTGATAAAAC CATTAATATT TCGCCTCCAA GTGTAAAAAT GCTGGATCTA
GGATCTGAAG AAGCCCTAGA AGAACTTCCA AAAGAGCCCA TGATTAAAGT TGCATTTGAT
TTAAAAATCG GTGATTTAAT TGATAGCGAA ATCATGCAGT TAATACCCTT TGAATTTGCT
AAAGATATGG TAGTTTCTTT AACTGGAGAT AGTGCAGAAG AAGTTTCAGC AGGTCAACAA
GAAATGGCTG CAAGTTCCGA AGGAACAGCA GCTGCAAAAC CCCAAGCTCC GACTCAAACT
GGTCCTGGGC CAGAATCTGG TCAATCGCCA GAAAGGGAGG TGTCTACACA AGGACAACCA
ACAGGACAAG GAGAGCAACA AATGAAACAA GAGCAACAGC CAAAGAAAGA CTATCAACCT
GTAGAATTTT CGCCTTTAGA AGGTCATCAA TCGGCTGCCA AAGGAGAAAA TTCCAATATT
GAATTGATAA TGGATGTTCC TCTGGAAGTA ACGGTTGAAC TGGGACAAAC CAAGAAAAAA
ATCCAAGAAA TATTGGAATT GGTTCCAGGA TCTATTATAG AACTGGATAA AATTGCCGGG
GAGCCAGTTG ATATAAAAGT TAATGGGAAA TTAATCGCTA AAGGGGAAGT AGTTGTAATC
GATGAGAACT TCGGTATCAG AATTACCGAA ATAATTAGTC CGGTGGAGAG GATTAACAAA
CTTCAGTAA
 
Protein sequence
MENNKDILSQ EEIDALLKGS GDDDSGDDGD NHGGSGGSGS GNDGNGGNGN NGDNGDNSLN 
ETEKDTVGEI GNISMGTAAT TLSVLLNQKV SITTPRVEVT DYATLREEFP KPHVAVEVEY
LEGLEGINVL ILKQEDAKMI ANLMMGGDGT DIAEGEIEEF HLSAVGEAMN QMMGSASTSM
SDMFDKTINI SPPSVKMLDL GSEEALEELP KEPMIKVAFD LKIGDLIDSE IMQLIPFEFA
KDMVVSLTGD SAEEVSAGQQ EMAASSEGTA AAKPQAPTQT GPGPESGQSP EREVSTQGQP
TGQGEQQMKQ EQQPKKDYQP VEFSPLEGHQ SAAKGENSNI ELIMDVPLEV TVELGQTKKK
IQEILELVPG SIIELDKIAG EPVDIKVNGK LIAKGEVVVI DENFGIRITE IISPVERINK
LQ