| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nther_1003 |
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| Symbol | |
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| ID | 6316568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010718 |
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| Strand | + |
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| Start bp | 1065800 |
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| End bp | 1067461 |
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| Gene Length | 1662 bp |
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| Protein Length | 553 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 642643375 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001917175 |
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| Protein GI | 188585630 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 0.399191 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTGCCA ATGATAATAG AAGAAATAGA AATGAGGATC AAGAAATAGA TAGAGATAAA
ATAGAAGAAT TATTGTTCAG TAGAAATACA AAGAAATTTG GTTTTGATTT AAATCCAGTG
GTTTCCTTAG GTGCAGGTAT AATAATTATA ATTTTTTCTG CTTTTGCTTT GATCAATCTT
GAAAGAGCTA ATATTTTAGT TAATTCAGTC AATGAAATCA TAGTGACAAA CTTTGATTGG
ATTTTTATTC TCTCGAGCAG TTTTTTTATT TTGATTTGCA TATATATAGC TTTTTCCAAA
TTAGGTAAAG TCAAAATAGG TGGATTAAAT GCCGAGCGAG AATTTAGTAA CTTTGCCTGG
TATTCCATGC TAATATCAGC AGGGATGGGT ATTGGACTGA TGTTTTGGGC AGTTGGTGAG
CCCTTAACTC ATTTTGAAGT TTTACCTCCA GTATTTGATA GCCCTTTCGA TAAACATACT
GCCATGGCCA CTACTTTTTT TCACTGGGGC TTACACCCTT GGGCAGTTTA TTCTTTAATA
GCTTTAGCTT TAGCCTTTTT CGCTTATAAT AAGCATTTGC CATTATCAAT TAGATCAGTC
TTTTATCCTT TTTTTAAAGA AAGAGTGTAC GGAACCCTAG GTGATGTTAT CGATACTTTA
GCGGTGCTTT CAACTCTGTT TGGATTAGCT ACTTCCTTGG GTTTAGGGGC TCAACAAATA
AACAGTGGTC TTGATTATTT ATTTGATATT GGTTTTAGTG TTAACATCCA AGTAGCTTTA
ATAATTGGAA TCACATTATT AGCTACCATT TCCGTATTAT CGGGTATAGA TAAAGGAGTA
AAGTTTCTGT CAAAAATGAA TATTAGATTG GCTGCAATTT TAATGGGAAT TATCTTATTA
TTGGGACCTA CTGGTTTTAT CTTAAGGCTT TTTTCCAATT CTTTGGGCTT ATATTTTAAT
AATATTATTG AATACTCTTT CTTTATTGCA GTAGAAGAAA CAGGGTGGCA AGCAAATTGG
TCGATCTTTT ATTTAGCTTG GTGGATATCC TGGTCTCCCT TTGTTGGAAT GTTTATTGCA
AGAATTTCAA AAGGTAGGAC CATCAGGGAA TTGATCTTAG GAGTAATGAT AGTACCGTCA
CTGTTATCAT TTTTATGGTT ATCTGTTTTT GGTGGTAGTG CAATTTTTAT TAACGAACAA
GTAGGAGGTT TGTATGAAGT AGTTCAGGAT GATTTACCTG TAGCCTTGTA TGAGTTGGTT
AATTTATTAA ATTTACCATT ATTAGCCGAA TTATTTAGAA TTTTATTGTT TATATTAATA
ACTTTCTTAG TGGCAGTATA TTTCATAACC TCCTCTGATT CGGGGTCACT AGTAGTTAAT
AAAATTACAT CAAGTGGTAA ACTTAATACT CCGGCAAATC AACGTGCTTT TTGGGCAATT
TTAGAGGGTT TGTTAGCAGC AGTTCTGTTA TTGATTGGTG GAGAAAAAGC TTTACTTGCT
CTACAGACAG CAGTAATTAG TACTGGACTT CCATTTGCAG TGGTATTAAC CGCCATGGCT
TTTGCCTTGA TTAAGGGAAT TGAAGATACT CGTCGAGAAC AAAAACGGAA ACGGGAGCGG
AGAAAATTTG AAAAACTTTT AAAAGCTCAC GACCAAGAAT AA
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| Protein sequence | MAANDNRRNR NEDQEIDRDK IEELLFSRNT KKFGFDLNPV VSLGAGIIII IFSAFALINL
ERANILVNSV NEIIVTNFDW IFILSSSFFI LICIYIAFSK LGKVKIGGLN AEREFSNFAW
YSMLISAGMG IGLMFWAVGE PLTHFEVLPP VFDSPFDKHT AMATTFFHWG LHPWAVYSLI
ALALAFFAYN KHLPLSIRSV FYPFFKERVY GTLGDVIDTL AVLSTLFGLA TSLGLGAQQI
NSGLDYLFDI GFSVNIQVAL IIGITLLATI SVLSGIDKGV KFLSKMNIRL AAILMGIILL
LGPTGFILRL FSNSLGLYFN NIIEYSFFIA VEETGWQANW SIFYLAWWIS WSPFVGMFIA
RISKGRTIRE LILGVMIVPS LLSFLWLSVF GGSAIFINEQ VGGLYEVVQD DLPVALYELV
NLLNLPLLAE LFRILLFILI TFLVAVYFIT SSDSGSLVVN KITSSGKLNT PANQRAFWAI
LEGLLAAVLL LIGGEKALLA LQTAVISTGL PFAVVLTAMA FALIKGIEDT RREQKRKRER
RKFEKLLKAH DQE
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