Gene Nther_0090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNther_0090 
Symbol 
ID6316361 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNatranaerobius thermophilus JW/NM-WN-LF 
KingdomBacteria 
Replicon accessionNC_010718 
Strand
Start bp106768 
End bp108393 
Gene Length1626 bp 
Protein Length541 aa 
Translation table11 
GC content36% 
IMG OID642642463 
ProductPAS modulated sigma54 specific transcriptional regulator, Fis family 
Protein accessionYP_001916277 
Protein GI188584732 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00173924 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.00306857 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTTTTT TCAGATATCA AGTTCAGACT GTTGATAGAG TTGGAATGGT TCTCGATGTT 
TTAAGAGTTG TATACTTAAA AAATATTAAT ATAACTGCTA TGGAAGTGGC ACCGCAGTTA
ATCTATTTGA AACTTGATTT TGCGCCTGCT ATGAAAGGGG CCTTAGAAAG CGCAGTCAAA
GAAATTCCTG GTGTTAGAGG GATTGATGAA ATTAGTCTGT TGCCTCAAGA AGAAAAAGAA
CAAAAACTCA GAGGTATTTT AGATACTATA GGAGAAGGAA TAATTGCATT AGACAAATCT
GGAATAATTA CTATGATTAA TCCCTCGGCA GAAAAGATTT TAAATCTATC AGAAAACATT
GAGGGTCGAG ACATTCGAGA TATACTTTCT GCTGAATTAC CCATATTAAA AACTTTGTCT
GCCGGGGAGG ATTATGACAA TAAGGAAATT TTTGTCACAC TACCTGGTGG TAAAAGCCAT
TATTTGACTT CAGGGAGACC TATCAAAAAC GATGATGGCA ATACTGTAGG AGCTGTAGCT
GCCATCAAAG ATATAAATGA AGTGCGTAAA TTAGTTCATC GGATTACTCA CCCGACCATG
CTATCTTTTG ACGATATAAT AGCTGAAAGT AGTATTATGA ATGAAACAAT TTCGTTTGCA
AAAAAAATTG CTCATGGAGA CTCTACCGTT CTGTTAACTG GGGAAAGCGG CACAGGAAAA
GAATTGTTCG CCAGAGCTAT TCATATGGAA AGTCCTAGGA AGGATTGTCC CTTTGTCCCT
CTTAACTGTG CTGCCATACC GGAAACACTG ATGGAAAGTG AATTATTTGG ATATGAAGAA
GGTGCTTTTA CGGGTGCGAA AAAAGGTGGA AAACATGGAC TGTTTGAGCT AGCTAACAAA
GGTACAGTAT TCTTAGATGA AATAGGTAAT CTCAATCCAC AATTACAAGT CAAATTACTC
AGAGTTTTAC AAGAAAGAGA AGTCCGCAGA ATAGGTGGAA AAGAGGAAAT TAGTGTCGAT
ATAAGGGTAA TCACTGCAAC AAACCATAAC TTAGAAAAGC TTGTTAATGA AGGTTATTTT
AGAGAAGACC TGTATTATCG CTTAAATGTT ATACCTATAA AACTGCCACC ATTAAGAAAT
AGAAAAGAGG ATATTATTCC TTTAGCAAAC CATATACTCG GGCAAATGAG GACTAATCAT
GGAGGACAGT ATCAACTTTC CCCAAAAAGT CGAGAACTGC TAAAAACTTA CTCTTGGCCC
GGCAATGTAA GAGAACTCGA AAATATAATT GAGCGTGCAG TTAATTTGGC TAATGACAAT
ATAATTGAAG GTGAACATTT ATTTTTTGGT CAAGAGGATG GTTTTTCAAA TTACGAAGGC
GAAATGGAAA ACTGGGAACA GAATCAACAG TATCAAAATG GTCAGAGCGA AGCAGAAATC
AGTGTAAATT ATAAAGACAA AGACTTTTCT CAAATATTAC AGTCAGTTGA AAAACAAATA
TTGCAAAAAG TTTTGAGTGA ACATGCAAGT GCCAGAAAAG CTGCTAAACA ATTAGGAGTT
TCCCATACTA CAATTTTAAA TAAAATTAAA AAATATGGGC TGCAAATTAA TCAAGAATCA
AACTGA
 
Protein sequence
MSFFRYQVQT VDRVGMVLDV LRVVYLKNIN ITAMEVAPQL IYLKLDFAPA MKGALESAVK 
EIPGVRGIDE ISLLPQEEKE QKLRGILDTI GEGIIALDKS GIITMINPSA EKILNLSENI
EGRDIRDILS AELPILKTLS AGEDYDNKEI FVTLPGGKSH YLTSGRPIKN DDGNTVGAVA
AIKDINEVRK LVHRITHPTM LSFDDIIAES SIMNETISFA KKIAHGDSTV LLTGESGTGK
ELFARAIHME SPRKDCPFVP LNCAAIPETL MESELFGYEE GAFTGAKKGG KHGLFELANK
GTVFLDEIGN LNPQLQVKLL RVLQEREVRR IGGKEEISVD IRVITATNHN LEKLVNEGYF
REDLYYRLNV IPIKLPPLRN RKEDIIPLAN HILGQMRTNH GGQYQLSPKS RELLKTYSWP
GNVRELENII ERAVNLANDN IIEGEHLFFG QEDGFSNYEG EMENWEQNQQ YQNGQSEAEI
SVNYKDKDFS QILQSVEKQI LQKVLSEHAS ARKAAKQLGV SHTTILNKIK KYGLQINQES
N