Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nther_0067 |
Symbol | |
ID | 6317200 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
Kingdom | Bacteria |
Replicon accession | NC_010718 |
Strand | + |
Start bp | 81091 |
End bp | 84681 |
Gene Length | 3591 bp |
Protein Length | 1196 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 642642439 |
Product | transcription-repair coupling factor |
Protein accession | YP_001916254 |
Protein GI | 188584709 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 60 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCTATT TGGTTGACAT AATTCCTTAT GAAAATAGTT TACAAAATAT TATTGAAGAT TTTTCTCCTA GGCGTAAGCG GAGTACTAAG CAGATGGTAT CAGGTATTAG CGGAAGTGAA TTTCCATTAA TACTGGCAGG ATTGTTTAGA GCTTATGGCC GGCCAATCAC TCTAATAACA TATGATAATT ACAGAGCGGA AAGCTTATAT TCAGATTTAG TTACACTGTT GGACAAAGAA CAAGTTTATA TCTATCCGGA GCATCAAGTA TATCCTTTTG AACTAGCCTG GCAAAGTAGA GATGTAAATA ACGAAAGAGC CCAGGTCCTA CAAGCTATGT TAAGTAAAAA ATCTGCTGTT TATATATTTT CATTGAAGTC TGCTAAAGAA AAGCTATCTC CCGCTCAAGT TGTAAAACAG ACATTTCTTA ACCTTGAAGT TGGGAATGAA AAGCTTTCTC CAACTATGAT TGCAGAAAAA CTTACAGGAT TAGGTTATGA AAATACTTCT ATGGTTGAAC AAAAGGGGCA GTTTAGTCAT AGAGGAGGCA TCATTGATGT TTTCCCTGTG GCAAGCGAAC TACCTGTCCG AATAGAGTTT TTTGATGACG AGATAGAGTC AATTAGAGCT TTTGACCTAG CAACTCAACG ATCTTTAAAA GAGTATAATA GCCTGGTAGT TGGACCAGGA AGTCAGCTTG TAATAGGAGA TAATACTAAT TTATCTCAGG CATTGAATCA ACTGACTCGT GAATTTGAGC TACAAAAAGG TAAATTAATG AAAGATGGAA TTACTGATCG ATCCGAGGAA TTAGAAGAGA GGATCAACAG GGATTTAAGT TCCTTAGAAA ACGGGATCTC ATTACCTCAT TTTCATAGAT ATTTATCTTA TTTTTACCCA AAAAATTATG GTACGATAAT AGATTTTTTA CCAACAAACT CTTTGTTTTG GGTTGATGAG CCTAATAGGA TTAAAGAAAG TGACGAGTTT TATAATAATG AAATAACAGA ATTAGCGGAA TCTCTAATTG AAGAAGGTAA AATTCTTCCT GGAGAAAGTA ATTTATTTTA TTCTATTGAA GATGTGTTGT CAGGAAACCC CTTTGATACA ATTTATTCTG CTAATTTTTT ACGCCAGAAT CCATTTGAAA ATGTGTCCCA GGCTACTAAT ATGTCAGTTA AGTCAATGAA TCAGTTTTAT GGTCAGTGGG ATTTTTTTCT AAAAGAAATG AAACAGTGGA TGAATAACAA TTATCGCATC ATCTTGTTTT CACCTACCCC GGAAAGTGCT AGAACATTAT ATGAAAATTT AAAGAAGGAA GAAATCGGTG CGACTATTGT GGAGAAGGGT AATACTAAAA CAGAAAATCA AGTTGTTATT GCTGTAGGAG ATTTAAAAAG TGGTTTTATA TTACAGGAAA GTAAATTAGC GGTAATTACT TATGGAGATT TATGGGGACA TCAAAAGAAG AAAATACGTA GCAGAAAACG TGATAAGTCA GAAGATAAAG CAGTGAAAGT ATCTGATTAT CGTGAACTTC AAGTTGAAGA TTATGTAGTT CATGAAAAAC ATGGAATCGG CAAGTATATG GGAATAAAAA CGTTAGAAGT CGGTGGCTTG TATAAAGACT ATCTCCATAT CAAATATGCC GGGAATGACA GCCTGTATGT TCCCACAGAA CAAATTGATG AGATTCAAAA ATATGTTGGT AAGGAAGGAA AACCTCCTAA GCTTTATTCT CTAGGAAGTA GTGAATGGCA AAAAGTAAAA CAAAGAGTAA AATCTTCAGT CAAAGAGTTG GCAGAGGATT TATTAAAATT ATATGCCGAA CGAAGTTCGC GTAAGGGATA CGCATTTAGC CAGGACACAC CATGGCAAAA AGAGTTTGAA GATTATTTCC CTTATGAGCT AACTCCGGAC CAAAAAAAGG CCATTTCTGA GATCAAGGAG GATTTAGAAT CTGAACAACC TATGGACAGA TTATTATGTG GGGATGTAGG GTACGGGAAA ACAGAAGTAG CAATGAGAGC AGCCTTCAAA GCTGTCATGG AGGGGAAACA AGTCTGTGTC TTAGTACCAA CAACCATTTT AGCACAACAA CATTTCCAAA CTTTTAAAGA GAGGTTTGCA CCATATCCTG TTGATATTCG TGTTATAAGC CGTTTTAGTA GTCAAAAGGA TGAGAAACTA GTTAAAGAAG AAATGAAAGA AGGCAATGCT GAGATTATCA TTGGAACACA TAAACTGTTA AATAAATCAG TCAAATTTAG AGACTTAGGT TTATTAATAA TAGACGAAGA ACAGCGATTT GGAGTTCAAC ATAAAGAAAA AATTAAAATG CTTAAAAAGA ATTTAGATGT GTTGACTATG ACAGCTACGC CAATTCCAAG AACTTTGCAT ATGTCTTTAG TTGGAGTTAG AGATTTAAGT GTGATTGAAA CTCCTCCGGA AGGACGCTTT CCTGTACAAA CTTATGTTAT GGAACATTCT CCTCAATTAA TTAGAGAAGC CGTTAACAGG GAAATTAGCC GAGAAGGCCA GGTTTATGTT GTTCATAACA GAGTGAAGGG TATAAATAAA GTAGCAAAGG AAGTAGCTGA TTGGGTGCCT GATGCCAAAG TAGGTGTTGC TCATGGTCAG ATGCCCGAAA AACAATTGGA ACGAGTTATG TTAGACTTTT ACGAAGGTAA ATATGATGTA CTAGTGTCTA CTTCCATAGT AGAAGCTGGA TTAGACATTC AAAATGTTAA TACAATCATA ATTTATAATG CAGATCGTAT GGGCTTAAGC CAGCCATACC AGTTAAGGGG CCGAGTAGGA AGAAGTAATC GAATGGCATA TGCATATTTA ACTTATCAGA AAGATAAAGT ATTAACACAA GAAGCAGAAA AACGCTTAAA AGCAATCAAA GAGTTTACAG AACTGGGGTC TGGTTTTAAG CTCGCTTTAC GTGACTTAGA AATTCGGGGA GCAGGCAATA TACTAGGGCC AGAACAACAT GGACATATTA TGGCCGTAGG TTTTGATATG TACACAAAAA TGCTGAAAGA TGCTATTAAA GAAATTTCTC AGGAAAGTCA AACTCAAGAA GAAACCACCA AGATTCAAGA TGACAAAACT GAAGTTGAAA AACCAGAAGA AGTAAAAGTG GAGTTGAATA TTAATGCTTA TTTACCAACA ACTTATATTT CTGATCATGA ACAAAAGATA ACTATTTACA AAAAAGCAAG AAGTATTAAC TCCTATAGTG AAGCTAATGA CTTGGAAACG GAGTTAAAAG ACCGATTTGG TTCATTACCT CAAGAAGTTA AAAACTTGCT AGATATTACT CGCCTGAAAG TTCTTGCCCG GGAAACAGGT ATCATTTCTA TTACCAGGCA AGGCTATTGG GTACACTTGG ACTTAGATCC TCGTCAGAAA ATTAGTGGGG AAAATTTAAT AAAATTAACT ACAAAATTCC CTGGGAAAAT CACAGTTTCT TCTCAAACAG ATGGATTAAC CTTAAAAGTA AACGTTAAAA ACTTAAAAGA TTCGGGTTTA ATGGACATGA TCAATAAAGT TGCCGAATCT TTGCTAGAGT TGGTAGCGTA A
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Protein sequence | MSYLVDIIPY ENSLQNIIED FSPRRKRSTK QMVSGISGSE FPLILAGLFR AYGRPITLIT YDNYRAESLY SDLVTLLDKE QVYIYPEHQV YPFELAWQSR DVNNERAQVL QAMLSKKSAV YIFSLKSAKE KLSPAQVVKQ TFLNLEVGNE KLSPTMIAEK LTGLGYENTS MVEQKGQFSH RGGIIDVFPV ASELPVRIEF FDDEIESIRA FDLATQRSLK EYNSLVVGPG SQLVIGDNTN LSQALNQLTR EFELQKGKLM KDGITDRSEE LEERINRDLS SLENGISLPH FHRYLSYFYP KNYGTIIDFL PTNSLFWVDE PNRIKESDEF YNNEITELAE SLIEEGKILP GESNLFYSIE DVLSGNPFDT IYSANFLRQN PFENVSQATN MSVKSMNQFY GQWDFFLKEM KQWMNNNYRI ILFSPTPESA RTLYENLKKE EIGATIVEKG NTKTENQVVI AVGDLKSGFI LQESKLAVIT YGDLWGHQKK KIRSRKRDKS EDKAVKVSDY RELQVEDYVV HEKHGIGKYM GIKTLEVGGL YKDYLHIKYA GNDSLYVPTE QIDEIQKYVG KEGKPPKLYS LGSSEWQKVK QRVKSSVKEL AEDLLKLYAE RSSRKGYAFS QDTPWQKEFE DYFPYELTPD QKKAISEIKE DLESEQPMDR LLCGDVGYGK TEVAMRAAFK AVMEGKQVCV LVPTTILAQQ HFQTFKERFA PYPVDIRVIS RFSSQKDEKL VKEEMKEGNA EIIIGTHKLL NKSVKFRDLG LLIIDEEQRF GVQHKEKIKM LKKNLDVLTM TATPIPRTLH MSLVGVRDLS VIETPPEGRF PVQTYVMEHS PQLIREAVNR EISREGQVYV VHNRVKGINK VAKEVADWVP DAKVGVAHGQ MPEKQLERVM LDFYEGKYDV LVSTSIVEAG LDIQNVNTII IYNADRMGLS QPYQLRGRVG RSNRMAYAYL TYQKDKVLTQ EAEKRLKAIK EFTELGSGFK LALRDLEIRG AGNILGPEQH GHIMAVGFDM YTKMLKDAIK EISQESQTQE ETTKIQDDKT EVEKPEEVKV ELNINAYLPT TYISDHEQKI TIYKKARSIN SYSEANDLET ELKDRFGSLP QEVKNLLDIT RLKVLARETG IISITRQGYW VHLDLDPRQK ISGENLIKLT TKFPGKITVS SQTDGLTLKV NVKNLKDSGL MDMINKVAES LLELVA
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