| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_06185 |
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| Symbol | fliF |
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| ID | 6306285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 2838918 |
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| End bp | 2840642 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642640046 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_001913905 |
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| Protein GI | 188576976 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.000901294 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACTTG CGATCAGCAA AGAAAACATG AACCAGAACG CCGAAAAGGC GGGGCAATGG
TTCGACCGTG TCAGCAGCCT GCAGATCACC CGCAAGCTGA CCATGATGGC GATGATCGCC
CTGGCGGTGG CGGCCGGCCT GGCGGTGTTC TTCTGGTCGC AGAAGCCCGG CTATCAGTCG
CTGTACACCG GCCTGGATGA AAAGGGCAAT GCCGAAGCGG CCGACCTGCT GCGCACCGCG
CAGATCCCCT ACAAGATCGA TCAGGGTACC GGCGCCATTT CGGTGCCGCA GGACCGTCTG
TACGACGCCC GCCTGAAGCT GGCCGGCTCC GGCCTCACCG GCAAGGAAAC CGGCGGCGGT
TTCGAACTGA TGGAAAAGGA CCCGGGCTTC GGCGTCAGCC AGTTCGTGGA AAACGCCCGT
TACCAGCACG CGCTGGAAAC CGAACTTTCG CGCACCATCG GCACGCTGCG CCCGGTGCGC
GAAGCCCGCG TGCACCTGGC CATTCCCAAA CCCAGCGCCT TCACCCGCCA GCGTGATGTG
GCCAGCGCCT CGGTGGTGCT GGAACTGCGC GGTGGCCAGG GTCTGGAACG CAACCAGGTC
GATGCCATCG TCAATCTGGT GGCGTCCAGC ATCCCGAACA TCACCCCCGA GCGCGTCACC
GTGGTCGATC AGAGTGGCCG CATGCTCTCC ATCGCCGACC CCAATAGCGA TGCCGCCCAG
CACGCTGCCC AGTTCGAACA GGTGCGCCGC CAGGAAAGCT CCTACAACCA GCGCATCCGC
GAATTGCTGG AACCGATGAC CGGCCCAGGC CGGGTCAACC CGGAAACCAG CGTGGACATG
GACTTTTCGG TGGTCGAAGA AGCCCGCGAG CTCTACAACG GTGAGCCGGC CAAGCTACGC
AGCGAGCAGG TCAACGACAC CAGCACCACG GCGACCGGCC CGCAGGGCCC TCCGGGCGCC
ACCAGCAACA GCCCCGGCCA GCCGCCGGCA CCGGCCGCTG CAGGCGCACC GGGCACCCCC
GCTGCTGCCA ACGGCCAGGC CACCGCAGCG GCCGCGCCGA CCGAAAGTTC CAAGAGCGCC
ACCCGTAACT ACGAATTGGA CCGAACCTTG CAGCACACCC GCCAGCCGGC CGGCCGCATC
AAGCGCGTCT CGGTGGCGGT GCTGCTGGAC AACGTCCCGC GCCCCGGCGC CAAGGGCAAG
ATGGTCGAAC AACCGCTCAC CGCTGCCGAG CTCACCCGTA TCGAAGGCCT GGTCAAGCAG
GCAGTGGGCT TTGATGCGGC ACGCGGCGAC ACGGTGTCGG TGATGAATGC GCCGTTCGTG
CGTGAAGCGG TGGCCGGCGA AGAAGGGCCG AAGTGGTGGG AAGACCCGCG CGTGCAGAAC
GGTCTGCGCT TGCTGGTCGG TGCGCTGGTG GTGCTGGCGC TGCTGTTCGG TGTGGTGCGC
CCCACCCTGC GTCAGCTCAC CGGCGTGACC CCCATCAAGG AAAAGCAGCG CAAGGGCGGC
AACGATGGCA CTCCACAGAG CGCCGACGTG CGGATGGTCG ATGACGAGGA TTCGCTGCTG
CCGCACATGG GCGAGGACAC CGCCAGCATC GGGCAGGAGC GCAAACCGGC AATCGCCCTG
CCGGATGCCT ACGAAGAACG CATGCGTGTT GCACGCGAAG CAGTCAAAGC CGATTCAAAA
CGTGTTGCAC AAGTCGTAAA GGGATGGGTT GCCAGTGAAG CCTGA
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| Protein sequence | MALAISKENM NQNAEKAGQW FDRVSSLQIT RKLTMMAMIA LAVAAGLAVF FWSQKPGYQS
LYTGLDEKGN AEAADLLRTA QIPYKIDQGT GAISVPQDRL YDARLKLAGS GLTGKETGGG
FELMEKDPGF GVSQFVENAR YQHALETELS RTIGTLRPVR EARVHLAIPK PSAFTRQRDV
ASASVVLELR GGQGLERNQV DAIVNLVASS IPNITPERVT VVDQSGRMLS IADPNSDAAQ
HAAQFEQVRR QESSYNQRIR ELLEPMTGPG RVNPETSVDM DFSVVEEARE LYNGEPAKLR
SEQVNDTSTT ATGPQGPPGA TSNSPGQPPA PAAAGAPGTP AAANGQATAA AAPTESSKSA
TRNYELDRTL QHTRQPAGRI KRVSVAVLLD NVPRPGAKGK MVEQPLTAAE LTRIEGLVKQ
AVGFDAARGD TVSVMNAPFV REAVAGEEGP KWWEDPRVQN GLRLLVGALV VLALLFGVVR
PTLRQLTGVT PIKEKQRKGG NDGTPQSADV RMVDDEDSLL PHMGEDTASI GQERKPAIAL
PDAYEERMRV AREAVKADSK RVAQVVKGWV ASEA
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