| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_05793 |
|---|
| Symbol | |
|---|
| ID | 6308590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 5173901 |
|---|
| End bp | 5175028 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642642303 |
|---|
| Product | radical SAM domain protein |
|---|
| Protein accession | YP_001916128 |
|---|
| Protein GI | 188579199 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1533] DNA repair photolyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAGA ACTTTTTCCC CAGCGCGAGC GCGGTAGCTG AGCGGGATGT CCGCAGCTCG
CGCACGGTCA TCAAGGGGCG CGGCACCACC GCCTACGTGC CCGGTCGCTT CTCGGTCACC
ACCGCCGTCG AGATAGACGA TGGTTGGGGC GCGGTCGATG CCGATGGCGA GACTGGCATT
CGTCCCAAGA CCGTGGTGGC CGAAGAAGTC GCACGCAGCA TCATCAGCCG CAACACCTCG
CCCGACATCG GGTTCTCGCA GTCGGTGAAC CCCTACAGGG GATGTGAGCA CGGCTGCGTG
TACTGCTTTG CCAGGCCCTC GCACGCGTAT CTGGATCTGT CGCCAGGGCT GGATTTCGAA
ACGCGGATCT TCGTCAAGCC GAATGCGGCA GCGCTGCTGC GCGCAGAGAT CGCACGCCCG
TCCTACCAGT GCTCGCCGAT CGCGTTGGGG ATCAATACCG ACGCCTACCA GCCCGCCGAG
CGGCGCCTGC ACATTTCCCG GCAATGCCTG GAAGTGCTTG CAGAAGCCCG TCACCCGGTC
AGCTTCGTGA CCAAGGCAGC GTTGATCGAA CGCGACATCG ATGTGCTGGC CGAGATGGCG
CAGCACAACC TGGTGTCGGT GTATTTCTCG GTCACCACGC TCGACAATCG CCTCGCGGCC
AAGATGGAGC CGCGTGCCGC CGCGCCGCAT GCGCGACTGC GCGCGATGCA GGCACTACAC
ACTGCCGGCG TACCGGTGGG GGTGCTGGTC GCTCCGGTCA TCCCGATGAT CAACGACAAG
GAACTGGAGC GCATTCTGGA CGCGGCCGCA GCCCACGGCG CACGTTCGGG CGGCTACGTG
TTACTGCGCC TGCCGCAGGA ACTCACCCAG TTATGGCGCG AGTGGCTCGA GCTGCACTAT
CCGGATCGTG CCAAGCATGT CATGAGCCTG ATCCAGCAGA TGCGTGGCGG TAAGGACTAC
GACAGCGGCT TCGGTAAGCG CATGGTTGGC GAAGGCCCGT TTGCAGAGCT GATCGCGCAG
CGGTTTTCCA TCGCGTATCG GCGCCTTGGA TTCGGGCGAT TGCCAAGGCT CGATACCACG
CAGTTCCGTC CACCCAGACC GGACACGCCG CAGCTTACTC TTTTCTAA
|
|---|
| Protein sequence | MQKNFFPSAS AVAERDVRSS RTVIKGRGTT AYVPGRFSVT TAVEIDDGWG AVDADGETGI
RPKTVVAEEV ARSIISRNTS PDIGFSQSVN PYRGCEHGCV YCFARPSHAY LDLSPGLDFE
TRIFVKPNAA ALLRAEIARP SYQCSPIALG INTDAYQPAE RRLHISRQCL EVLAEARHPV
SFVTKAALIE RDIDVLAEMA QHNLVSVYFS VTTLDNRLAA KMEPRAAAPH ARLRAMQALH
TAGVPVGVLV APVIPMINDK ELERILDAAA AHGARSGGYV LLRLPQELTQ LWREWLELHY
PDRAKHVMSL IQQMRGGKDY DSGFGKRMVG EGPFAELIAQ RFSIAYRRLG FGRLPRLDTT
QFRPPRPDTP QLTLF
|
|---|
| |