| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_04827 |
|---|
| Symbol | |
|---|
| ID | 6304971 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 1451492 |
|---|
| End bp | 1452214 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642638744 |
|---|
| Product | ribosomal large subunit pseudouridine synthase F |
|---|
| Protein accession | YP_001912621 |
|---|
| Protein GI | 188575692 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGACGC GACTCAACAA ATACATAGCC GAAACCGGCT TCTGCTCACG CCGCCAGGCC
GATCGCTTGA TCGGCGAACG GCGGGTGACC GTCAATGGCG TGCCCGCCGG CACCGGCGCG
GTGGTCGGCG AGGAAGACAC CGTGCTGGTG GATGGCCAGC CGCTGCGCGT GCGCGAGGCC
AAGAAGCTCG GTGGCCGCAA ACATGTCTAC ATCGCGCTCA ACAAGCCGGT GGGCATCACC
TGCACCACCG AGAGTTCGGT CAAAGGCAAT ATCGTCGAAT TCGTTGGCCA CGAGCAGCGC
ATCTTCCCGA TCGGCCGGCT CGACAAGGAG TCCGAAGGGC TGATCCTGAT GACCAGCAAC
GGCAACATCG TCAACGAGAT TCTGCGCGCG GAAAATCGCC ACAAGAAGGA ATATCTGGTG
GCGGTCAACA AGCCGGTCAC CGACGAATTC CTGCGTGGCA TGGCGCGCGG CGTGCGTATC
CACAACGAGA CCACGCTGCC ATGCCACACC GCGCGCATCG CCAAATTCGG CTTCCGCATC
GTGCTGGAGC AGGGCTTGAA TCGGCAGATC CGCCTGATGG CCGCCGAGTT TGGCTATCGG
GTCACGCAAC TGCGCCGCGT GCGCATCGAC AACATCAAGC TGGCCGCGCT CAAGCCAGGG
CAGTGGCGCA ACCTCAGCGA TGCGGAATTG CGCGGCCTGC TGCCGCAACG CACCGACTGG
TAA
|
|---|
| Protein sequence | MTTRLNKYIA ETGFCSRRQA DRLIGERRVT VNGVPAGTGA VVGEEDTVLV DGQPLRVREA
KKLGGRKHVY IALNKPVGIT CTTESSVKGN IVEFVGHEQR IFPIGRLDKE SEGLILMTSN
GNIVNEILRA ENRHKKEYLV AVNKPVTDEF LRGMARGVRI HNETTLPCHT ARIAKFGFRI
VLEQGLNRQI RLMAAEFGYR VTQLRRVRID NIKLAALKPG QWRNLSDAEL RGLLPQRTDW
|
|---|
| |