Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_04539 |
Symbol | ychF |
ID | 6304747 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | + |
Start bp | 1234824 |
End bp | 1235915 |
Gene Length | 1092 bp |
Protein Length | 363 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642638521 |
Product | GTP-dependent nucleic acid-binding protein EngD |
Protein accession | YP_001912402 |
Protein GI | 188575473 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0012] Predicted GTPase, probable translation factor |
TIGRFAM ID | [TIGR00092] GTP-binding protein YchF |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.910533 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTATCA AATGCGGCAT CGTCGGCCTG CCCAACGTCG GCAAGTCGAC CCTATTCAAT GCGCTGACCA AGGCTGGCAT CGCTGCGGCC AACTTCCCGT TCTGCACCAT CGAGCCGAAC GTCGGCATCG TGCCGGTGCC CGATCCGCGC CTGAATCAGC TGGCCGGCAT CGTCAAGCCG CAAAAGCTGA TTCCCACCGC GGTCGAGTTC GTCGATATCG CCGGCCTGGT TGCTGGCGCG GCAAGCGGCG AAGGCCTGGG CAATAAGTTC CTGGCGCACA TCCGCGAGGT CGATGCGATC ACCCACGTGG TGCGTTGCTT CGACAACGAC GACGTGATTC ACGTCAATAA CAAGGTCGAC CCGATCGCCG ATATCGAAAC CATTGATACC GAGCTGGCGC TGGCCGATCT GGATAGCGTG GAAAAGGCCC TCAACCGTGC CGAACGCAGT GCAAAAGGCG GCGACAAGGA TGCAGCGGCG CGAAAGCCGG TGCTGGCCAA GTTGCAAGCC GCGCTGGCCG ACGGCAAGTC GGGTCGCGCC GCCGGTCTGG ACGACGAAGA AAAGGCGCTG GTGCGTGATC TGTTCCTGCT GACGCTCAAG CCTGTGCTTT ACATCGCCAA CGTGCTCGAG GACGGTTTCG AAAACAACCC GCACCTGGAT GCGGTACGCG CGCATGCGCT GGCCGAAGGT GCGGAAGTGG TGCCGGTGTC GGCCGCCATC GAAGAGGAGT TGTCCCAGCT CGACGACGAA GACCGCGACA CATTCCTGGC CGATCTCGGC CTGGAAGAGC CAGGGTTGAA TCGCGTCATT CGTGCGGCTT ACACACTGTT GGGTCTGCAG ACCTACTTCA CTGCGGGCGT CAAGGAAGTG CGTGCCTGGA CGGTTCGGGC CGGTTCGACG GCACCACAGG CCGCTGCCGT GATCCACACC GATTTCGAGA AGGGCTTCAT CCGGGCCGAG ACGATTGGCT TTGACGACTT CATCAAATAC CGCGGCGAAG CCGGTGCCCG CGATGCCGGG CGTCTGCGTC TGGAAGGCAA GGAATACCGC GTGCAGGAAG GCGATGTGCT GCACTTCCGT TTCAACGTCT GA
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Protein sequence | MGIKCGIVGL PNVGKSTLFN ALTKAGIAAA NFPFCTIEPN VGIVPVPDPR LNQLAGIVKP QKLIPTAVEF VDIAGLVAGA ASGEGLGNKF LAHIREVDAI THVVRCFDND DVIHVNNKVD PIADIETIDT ELALADLDSV EKALNRAERS AKGGDKDAAA RKPVLAKLQA ALADGKSGRA AGLDDEEKAL VRDLFLLTLK PVLYIANVLE DGFENNPHLD AVRAHALAEG AEVVPVSAAI EEELSQLDDE DRDTFLADLG LEEPGLNRVI RAAYTLLGLQ TYFTAGVKEV RAWTVRAGST APQAAAVIHT DFEKGFIRAE TIGFDDFIKY RGEAGARDAG RLRLEGKEYR VQEGDVLHFR FNV
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