| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_04530 |
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| Symbol | rpoB |
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| ID | 6304759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 1241942 |
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| End bp | 1246093 |
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| Gene Length | 4152 bp |
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| Protein Length | 1383 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642638533 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001912410 |
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| Protein GI | 188575481 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0997174 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGTCTT ATTCGTTCAC CGAAAAAAAG CGTATCCGCA AGGATTTCGG TAAGCAGCGC
TCGATTCTCG AAGTGCCGTT TCTGCTTGCC ATCCAGGTGG ATTCCTACCG CGAATTCCTG
CAGGAAGATG TGGAGTCGAC CAAGCGCAAG GACCTCGGTC TGCACGCGGC ATTGAAGTCG
GTGTTCCCGA TTTCCAGCTA CAGCGGCAAC GCTGCGCTGG AGTACGTCGG TTACAAGTTG
GGTCAGCCGG TGTTCGACGA GCGCGAATGC CGTCAGCGTG GCATGAGCTA TGGCGCGCCG
CTGCGCGTGA CCGTGCGCCT GGTGATCTAC GACCGCGAGT CGTCCACCAA GGCGATCAAG
TACGTGAAGG AGCAGGAGGT CTATCTCGGC GAAATTCCGC TGATGACCGG CAACGGTACC
TTCATCGTCA ACGGCACCGA GCGTGTGATC GTGTCGCAGC TGCATCGCTC GCCGGGCGTG
TTTTTCGACC ACGACCGTGG CAAGACCCAC AGCTCGGGCA AGCTGCTGTA CAGCGCCCGC
ATCATTCCGT ACCGCGGTTC CTGGTTGGAC TTCGAGTTCG ACCCGAAGGA TGCGCTGTTC
ACCCGTATCG ACCGTCGCCG CAAGTTGCCG GTGTCGATCC TGCTGCGCGC GCTCGGCTAC
AACAACGAAG AAATGCTGGC CGAGTTCTTC GAGATCAACA CCTTCCACAT CAATCCGGAC
GAAGGCGTGC AGCTGGAGCT GGTACCGGAG CGTCTGCGTG GCGAAACGCT GAACTTCGAC
CTGGCCGATG GCGATAAGGT CATCGTGGAA GCCGGTAAGC GCATCACCGC GCGTCACGTC
AAGCAACTGG AAGCCGCCGG CGTTGCCGCG CTGGCCGTGC CGGACGACTA CCTGGTCGGC
CGCATCCTGT CGCACGACGT GGTCGATGGC TCCACCGGCG AACTGCTGGC CAATGCCAAC
GACGAGATCA GCGAAGACCA ACTGACCGCG TTCCGCAAGG CTGGCGTCGA TGCGGTCGGC
ACCCTGTGGG TGAACGATCT GGATCGTGGT CCGTACCTGT CCAACACCTT GCGCATCGAT
CCGACCAAGA CGCAGCTGGA AGCGCTGGTC GAAATCTACC GCATGATGCG TCCGGGCGAG
CCGCCGACCA AGGAAGCCGC GCAGAACCTG TTCCACAACC TGTTCTTCAC CTTCGAGCGC
TACGACCTGT CCACGGTCGG CCGCATGAAG TTCAACCGTC GCGTCGGCCG CAAGGACGTG
CTGGGCGAGT CGGTGCTGTA CGACAAGAAG TATTTTGCCG AGCGTAACGA CGAAGAATCC
AAGCGCCTGG TCGCCGAGCA CACCGACACC TCCGACATCC TGGAAGTGAT CAAGGTCCTG
ACCGAGATCC GCAATGGTCG CGGCGTGGTC GATGACATCG ATCACCTGGG CAACCGTCGC
GTGCGTTCGG TCGGCGAAAT GGCCGAGAAC GTGTTCCGCG TAGGCCTGGT CCGCGTCGAG
CGTGCGGTCA AGGAGCGTCT GTCGATGGCG GAGTCGGAAG GTCTGACCCC GCAGGAATTG
ATCAACGCCA AGCCGGTGGC TGCAGCGATC AAGGAATTCT TCGGCTCCTC GCAGCTGTCG
CAGTTCATGG ACCAGAACAA CCCACTGTCG GAAGTGACGC ACAAGCGTCG CGTCTCCGCA
CTGGGCCCGG GCGGTCTGAC CCGCGAACGC GCCGGCTTCG AAGTGCGCGA CGTGCATCCG
ACCCATTATG GCCGCGTCTG CACCATCGAA ACGCCGGAAG GCCCGAACAT CGGCCTGATC
AACTCGCTGG CCGTGTTCGC CCGCACCAAC CAGTACGGCT TCCTCGAGAC GCCGTACCGT
AAGGTGCTGG ACGGCAAGGT CTCCGACGAC GTCGAATACC TCTCGGCGAT CGAAGAAAAC
GAGTACGTGA TCGCCCAGGC GAACGCGCTG ACCGATGCAA AGAACATGCT CACCGAGCAG
TTCGTGCCGT GCCGGTTCCA GGGCGAATCG CTGTTGAAAC CGCCGTCCGA AGTGCACTTC
ATGGACGTTT CGCCGATGCA GACCGTTTCG GTCGCAGCGG CGCTGGTGCC GTTCCTTGAG
CACGACGACG CCAACCGCGC ACTGATGGGC GCCAACATGC AGCGCCAGGC CGTGCCGACG
CTGCGTTCGC AGAAGCCGCT TGTCGGTACC GGCATCGAGC GTGCGGTTGC GCGCGACTCG
GGCGTGACCG TCAATGCGCT GCGTGGTGGC GTGATCGAGC AGATCGACGC CGCTCGTATC
GTGGTCAAGG TCAATGAGGC AGAAATTGGC GGCGGCACCG ATGCCGGCGT GGATATCTAC
AACCTGATCA AGTACACCCG CTCCAACCAG AACACCTGCA TCAACCAGCG TCCGCTGGTG
AATGTGGGTG ACGTGATCGC GCGCGGCGAC GTGCTGGCCG ACGGCCCGTC CACCGACATC
GGTGAACTGG CGCTGGGTCA GAACATGCTG ATCGCCTTCA TGCCGTGGAA CGGCTACAAC
TTCGAAGACT CCATCCTGCT CTCCGAACGC GTGGTGGAAG AAGATCGTTA CACCACGATC
CACATCGAAG AGCTGACCTG CGTTGCGCGC GACACCAAGC TGGGGCCGGA GGAAATTTCC
GCAGACATCC CGAACGTGTC CGAGCAGGCG TTGAACCGTC TGGACGAGAG TGGCGTGGTG
TACATTGGTG CGGAAGTACG CGCTGGCGAC ATCATGGTCG GCAAGGTCAC GCCGAAGGGC
GAAAGCCAGC TGACCCCGGA AGAAAAGCTG CTGCGTGCCA TCTTCGGTGA GAAGGCGTCC
GACGTGAAGG ACAGCTCGCT GCGCGTGCCC CCGGGCATGG ATGGCACCGT CATCGACGTG
CAGGTCTTCA CTCGCGACGG CATCGAGAAG GACAAGCGTG CGCGTCAGAT CGAGGAAAAC
GAGATTAAGC GCGTCAAGAA GGACTTCGAC GACCAGTTCC GCATCCTGGA AGCGGCCATC
TACGCCCGTC TGCGCTCGCA GATCGTGGGC AAGGTCGCCA ACGGTGGCGC GAACCTGAAG
AAGGGCGACT CCGTCACCGA CGCCTACCTG GACGGGCTGA AGAAGTCCGA TTGGTTCCAG
CTGCGCATGA AGGACGAGGA CGCTGCCGAC GCCATCGAGC GTGCGCAGAA GCAGATCCAG
GCGCACGAGA AGGAATTCGA AGCACGGTTT GCCGACAAGC GCGGCAAGAT CACCCAGGGC
GACGACCTCG CGCCGGGCGT GCTGAAGATG GTCAAGGTGT TCCTGGCGGT GAAGCGCCGC
ATCCAGCCGG GCGACAAGAT GGCAGGCCGC CACGGCAACA AGGGTGTGGT CTCCAACGTG
GTGCCGGTGG AAGACATGCC GTACATGGCC ACCGGTGAGT CGGTCGACAT CGTGTTGAAC
CCGCTCGGCG TGCCGTCGCG TATGAACATC GGCCAGATTC TGGAAGTGCA TCTGGGCTGG
GCCGCCAAGG GCCTGGGTCG CAAGATCCAG CGCATGCTGG AAGCCCAGGC CGCCGTCAGC
GAACTGCGCA AGTTCCTGGA CGACATCTAC AACCACGACA ACGCGATCAA TGCGCAGCGC
GTGGATCTGT CGCAGTTCAG CGATGAGGAA TTGCTCAACC TGGGCAAGAA CCTGATCGAC
GGCGTACCGA TGGCCACCCC GGTGTTCGAC GGCGCCAGCG AAGCGGAAAT CAAGCGCATG
CTGGAACTGG CCGACCTGCC GCAGAGCGGT CAGACCCAGC TGTACGACGG TCGCACTGGC
GAAGCGTTCG ATCGCAAGAC CACGGTCGGC TACATGCACT ACCTGAAGTT GAACCACTTG
GTCGACGACA AGATGCATGC ACGTTCGACT GGCCCGTACT CGCTCGTCAC TCAGCAGCCG
CTGGGCGGCA AGGCGCAATT CGGTGGTCAG CGCTTCGGCG AAATGGAAGT CTGGGCGCTG
GAAGCCTACG GCGCTGCCTA CACCCTGCAG GAAATGCTGA CGGTGAAGTC CGACGACGTG
CAGGGCCGCA ACCAGATGTA CAAGAACATC GTCGATGGTG AGCACGAGAT GGTCGCAGGA
ATGCCGGAAT CCTTCAACGT GTTGGTGAAG GAAATCCGTT CGCTGGCGAT CCACATGGAA
CTGGAAGAGT AA
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| Protein sequence | MTSYSFTEKK RIRKDFGKQR SILEVPFLLA IQVDSYREFL QEDVESTKRK DLGLHAALKS
VFPISSYSGN AALEYVGYKL GQPVFDEREC RQRGMSYGAP LRVTVRLVIY DRESSTKAIK
YVKEQEVYLG EIPLMTGNGT FIVNGTERVI VSQLHRSPGV FFDHDRGKTH SSGKLLYSAR
IIPYRGSWLD FEFDPKDALF TRIDRRRKLP VSILLRALGY NNEEMLAEFF EINTFHINPD
EGVQLELVPE RLRGETLNFD LADGDKVIVE AGKRITARHV KQLEAAGVAA LAVPDDYLVG
RILSHDVVDG STGELLANAN DEISEDQLTA FRKAGVDAVG TLWVNDLDRG PYLSNTLRID
PTKTQLEALV EIYRMMRPGE PPTKEAAQNL FHNLFFTFER YDLSTVGRMK FNRRVGRKDV
LGESVLYDKK YFAERNDEES KRLVAEHTDT SDILEVIKVL TEIRNGRGVV DDIDHLGNRR
VRSVGEMAEN VFRVGLVRVE RAVKERLSMA ESEGLTPQEL INAKPVAAAI KEFFGSSQLS
QFMDQNNPLS EVTHKRRVSA LGPGGLTRER AGFEVRDVHP THYGRVCTIE TPEGPNIGLI
NSLAVFARTN QYGFLETPYR KVLDGKVSDD VEYLSAIEEN EYVIAQANAL TDAKNMLTEQ
FVPCRFQGES LLKPPSEVHF MDVSPMQTVS VAAALVPFLE HDDANRALMG ANMQRQAVPT
LRSQKPLVGT GIERAVARDS GVTVNALRGG VIEQIDAARI VVKVNEAEIG GGTDAGVDIY
NLIKYTRSNQ NTCINQRPLV NVGDVIARGD VLADGPSTDI GELALGQNML IAFMPWNGYN
FEDSILLSER VVEEDRYTTI HIEELTCVAR DTKLGPEEIS ADIPNVSEQA LNRLDESGVV
YIGAEVRAGD IMVGKVTPKG ESQLTPEEKL LRAIFGEKAS DVKDSSLRVP PGMDGTVIDV
QVFTRDGIEK DKRARQIEEN EIKRVKKDFD DQFRILEAAI YARLRSQIVG KVANGGANLK
KGDSVTDAYL DGLKKSDWFQ LRMKDEDAAD AIERAQKQIQ AHEKEFEARF ADKRGKITQG
DDLAPGVLKM VKVFLAVKRR IQPGDKMAGR HGNKGVVSNV VPVEDMPYMA TGESVDIVLN
PLGVPSRMNI GQILEVHLGW AAKGLGRKIQ RMLEAQAAVS ELRKFLDDIY NHDNAINAQR
VDLSQFSDEE LLNLGKNLID GVPMATPVFD GASEAEIKRM LELADLPQSG QTQLYDGRTG
EAFDRKTTVG YMHYLKLNHL VDDKMHARST GPYSLVTQQP LGGKAQFGGQ RFGEMEVWAL
EAYGAAYTLQ EMLTVKSDDV QGRNQMYKNI VDGEHEMVAG MPESFNVLVK EIRSLAIHME
LEE
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