Gene PXO_04496 details

Gene Information

• Locus tag: PXO_04496
• Symbol: rpoA
• ID: 6304792
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: +
• Start bp: 1269478
• End bp: 1270476
• Gene Length: 999 bp
• Protein Length: 332 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 642638566
• Product: DNA-directed RNA polymerase subunit alpha
• Protein accession: YP_001912443
• Protein GI: 188575514
• COG category: [K] Transcription
• COG ID: [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit
• TIGRFAM ID: [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGGTTA CCGCCAACCA GGTTCTGCGC CCCCGTGGTC CGCAGATCGA ACGTCTTACC 
GACAACCGTG CCAAGGTCGT GATCGAACCC TTGGAGCGCG GTTACGGGCA CACGCTGGGC 
AATGCCCTGC GTCGTGTGTT GTTGTCGTCG ATCCCCGGTT TTGCGATCAC CGAGGTCGAG 
ATCGACGGCG TGCTGCACGA GTACACCACG GTCGAAGGGT TGCAGGAAGA CGTGCTTGAC 
GTCCTGCTGA ACCTGAAAGA CGTGGCGATT CGCATGCACA GTGGCGACAG CGCCACGCTG 
TCGTTGTCCA AGCAGGGTCC GGGTACGGTC ACTGCGGCCG ACATCAGGAC CGATCACAAC 
GTTGAGATCA TCAACGGCGA CCACGTGATC TGCCACCTGA CCAAAGACAC CGCATTGAAC 
ATGCGCTTGA AGATCGAGCG CGGCTTCGGC TATCAGCCGG CTGCTGCGCG TCGTCGTCCG 
GACGAAGAGA CCCGCACCAT CGGCCGTCTG ATGCTGGATG CGTCGTTCTC GCCCGTGCGT 
CGCGTTGCCT ACGCTGTGGA AGCTGCGCGT GTTGAACAGC GCACGGACCT CGACAAGCTG 
GTGATCGATA TCGAAACCAA CGGCACGATC GATGCCGAGG AAGCCGTGCG CACCGCCGCC 
GACATCCTCA GCGATCAGCT GTCGGTGTTC GGCGATTTCA CCCACCGCGA TCGCGGTGCG 
GCCAAGCCGG CTGCCAGCGG CGTGGATCCG GTGCTGCTGC GCCCGATCGA CGACCTGGAG 
CTGACCGTGC GTTCGGCCAA TTGCCTCAAG GCTGAGAGCA TCTACTACAT CGGCGATCTG 
ATCCAGAAGA CCGAAGTCGA GCTGCTCAAG ACCCCGAATC TGGGTAAGAA GTCGCTGACC 
GAAATCAAGG AAGTGCTGGC ACAGCGCGGC CTTGCATTGG GCATGAAGCT GGAGAACTGG 
CCGCCGGCCG GCGTCGCCCA GCACGGCATG CTTGGTTAA 

 

Protein sequence

MTVTANQVLR PRGPQIERLT DNRAKVVIEP LERGYGHTLG NALRRVLLSS IPGFAITEVE 
IDGVLHEYTT VEGLQEDVLD VLLNLKDVAI RMHSGDSATL SLSKQGPGTV TAADIRTDHN 
VEIINGDHVI CHLTKDTALN MRLKIERGFG YQPAAARRRP DEETRTIGRL MLDASFSPVR 
RVAYAVEAAR VEQRTDLDKL VIDIETNGTI DAEEAVRTAA DILSDQLSVF GDFTHRDRGA 
AKPAASGVDP VLLRPIDDLE LTVRSANCLK AESIYYIGDL IQKTEVELLK TPNLGKKSLT 
EIKEVLAQRG LALGMKLENW PPAGVAQHGM LG