Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_04327 |
Symbol | pgaB |
ID | 6304476 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | - |
Start bp | 969517 |
End bp | 971391 |
Gene Length | 1875 bp |
Protein Length | 624 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642638253 |
Product | biofilm PGA synthesis lipoprotein PgaB |
Protein accession | YP_001912135 |
Protein GI | 188575206 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.215859 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCGTAC TTGTGTTGGC TCTGCTGATG TCGATCCTGC CCGTGCAGGC CAAGTCGCCG GTCGACCCGG ATGCCGTCGA CAATGGCCTG CTGGTCCTGA GCTACCACGA CATCCGCGAC GATGTGCGCG AGAACGCCGA TGCCGATGCC TTTGCAGTCA GCACCCAGAA CTTCGCCGCG CACCTGGACT GGCTGTCGGC GCACGACTAC CACCCCATTT CGCTCTCGCA ACTGATCAAG GCCTCGCAGG GCAAAGCAAC ACTGCCGCCG CGGGCGGTGC TGCTCACCTT CGACGACGGA CTGCGCAGCA TGTACACCCG CGTCTATCCG CTACTGCGCG CCTATCACTA TCCGGCGCTG GTGGCGGTGA TCACCGACTA CGTGGACATG GCGCCTGATC GCACCATCGA CTATGGCTAC CGCCCGTTCG GCCACGACGA TTTCCTCACC TGGGACCAAT TGCGCGAGAT GCTGGCCAGC GGCCTGATCG AAGTGGCCAG CCATACCGAC AACCTGCATC ACGGGGTGCA GTCCAATCCG TACGGTAACC AGGCCCCGGC GGTGAATACC CGGATCTACG ACCCCACGAC ACAACGTTAC GAGGACGTCG GGCAATACGC CGAGCGCCTG CGCCAGGACC TCGCCCGCAG CGTGGAACGC ATCGAGCATC AGCTTGGCGT GCGCCCACGG GCGATCGTGT GGCCATATGC GGCCTACAAC CAGATGAGCA ACGACATCGC CGAGCAACTC GGCATGCCGG TCTCCTTCGA TCTGGAAGGC CGTAGCACGC CGGTCACTCA CGACCTGCAT GGCCTGGCAC GCCTGCTGGT GACCAACAAT CCGACCGTGA CAGGACTGGC GTTCGAACTG CGTCGCAACC CTGCACTGGA TGGAACGCGC GCGCTGCAGA TCGATCTCGA TTCGCTCTAC GACAGCGATC CGGCGCAGCA GGCCCGCAAC CTGGACACGC TGATCGACAG GGTCAAACGC ATCGGCCCGA CCCACGTCTA TCTGCAGGCC TTCGCCGATC CGGACGGTAA CAACACCGCC AGTGCGCTGT ACTTCCCCAA CCGGCACATG CCGATGCGCG AGGATCTGTT CAATCGCGTC GCCTGGCAGT TGAAGACTCG TGCCGGAGTG AAGGTCTACG CCTGGCTGCC GGTGCTCGGC TATGAACTGC CCGACCTGAA GCAACGCGAG GCACTGCGCA TCCACAGTAC CGAACGCGAC GGCATGTACC GCCTGGATTT CACAAACCCG CAGGCACGGC AGATCATCAA GGACATCTAC GAAGACCTGG CCATTAACTC GTACATGGAA GGCATTTTGT TCCATGACGA TGGCTACCTG CGCGACACCG AATTACCGCA GTTACCGCAG GAAGGCCACG ACGGTCTCCG CACCCAGGCG CTGATCGACT TCACTATGGA ACTGCGCGAC AGCGCGCAAC GCTGGCGGCC GAAGCTGGGC ACGGTGCGCA ATCTTTACGC ACAACCGGTC CTGCAACCGC AGAGCGCCGC CTGGTTCGCC CAACGCCTGG ATCTGTTCAA CCGGGCCTAT GACCGTACCG CCCTGATGGC CATGCCGTGG ATGGAGGGCA GCCACGACCC GGAACGCTGG CTGGACACTC TGGTGTCGGC CGTCCGCGCG CAAGACCCGG AAATGAAACA CACCCTGTTC GAACTGCAGA CGGTGGACTG GCACACCCAG ACGCCGATCA GCGGCGAGCG CTTGATCGCG CAGATCCACC GCCTGCAGTC GCAGGGCGTG CGCCATTTTG CGTGGTATCC GGATGACTTC ATCGGCAACA GGCCGTCGAC GGAGGACGCA CGAGCGGCGA TGTCCGCGCG CAACTTCCCT TACCCGGACA AGTGA
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Protein sequence | MRVLVLALLM SILPVQAKSP VDPDAVDNGL LVLSYHDIRD DVRENADADA FAVSTQNFAA HLDWLSAHDY HPISLSQLIK ASQGKATLPP RAVLLTFDDG LRSMYTRVYP LLRAYHYPAL VAVITDYVDM APDRTIDYGY RPFGHDDFLT WDQLREMLAS GLIEVASHTD NLHHGVQSNP YGNQAPAVNT RIYDPTTQRY EDVGQYAERL RQDLARSVER IEHQLGVRPR AIVWPYAAYN QMSNDIAEQL GMPVSFDLEG RSTPVTHDLH GLARLLVTNN PTVTGLAFEL RRNPALDGTR ALQIDLDSLY DSDPAQQARN LDTLIDRVKR IGPTHVYLQA FADPDGNNTA SALYFPNRHM PMREDLFNRV AWQLKTRAGV KVYAWLPVLG YELPDLKQRE ALRIHSTERD GMYRLDFTNP QARQIIKDIY EDLAINSYME GILFHDDGYL RDTELPQLPQ EGHDGLRTQA LIDFTMELRD SAQRWRPKLG TVRNLYAQPV LQPQSAAWFA QRLDLFNRAY DRTALMAMPW MEGSHDPERW LDTLVSAVRA QDPEMKHTLF ELQTVDWHTQ TPISGERLIA QIHRLQSQGV RHFAWYPDDF IGNRPSTEDA RAAMSARNFP YPDK
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