| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_04069 |
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| Symbol | |
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| ID | 6304212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 715606 |
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| End bp | 717480 |
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| Gene Length | 1875 bp |
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| Protein Length | 624 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642637993 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001911876 |
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| Protein GI | 188574947 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.41319 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAACG AACGTCCTGC CCAGCAATCC GACATCAAGC TACTGATCAG CAAGGGCCTG
GAACAGGGCT ATCTGACCTA CGCCGAAGTC AATGACCATC TGCCCGACGA CCTCGTCGAC
CCGGAGCAGA TCGAAGACAT CATCAGCATG ATCAACGGCA TGGGCATCGA TGTCCATGAA
GTTGCACCCG ATGCCGAAAC CCTCTTGCTC AACGATGGCA ACACCGGCAA CCGCGAGGTT
GACGACACCG CCGCCGAAGA AGCTGCCGCC GCGCTGACCG CGCTCGACAC CGAAGGTGGC
CGCACCACCG ACCCGGTGCG CATGTACATG CGCGAAATGG GCACCGTCGA GCTGCTGACC
CGCGAAGGCG AAATCGCCAT CGCCAAGCGC ATCGAAGAAG GCCTGAGCCA GGTCCAGGCA
GCATTGGGCG TGTTCCCGCT GTCGACCGAA ATGCTGCTGG CCGATTACGA AGCGCACAAG
GAAGGCAAGA AGCGTCTGGC CGAGATCGTG GTCGGCTTCA ACGACCTGAT CGAAGAAGCC
GACGCCGCCG CCGCCGCGCT GGCTGCCGCT GGTCCCGTCG CTGTCGACGA GGATGCGCTG
GATGAAGACG ACGACGAAGA CGGCGATGAC GCCGCCGCCG AAGAAGAGGT CGGCCCGACC
GGTCCGGACC CGGTTGAAGT CGCCACGCGC ATGCAGAACC TGGCCAACGA ATACGCCAAG
TTCAAGAAGG TCTATGCCAA GAACGGCGCC GAGCACAAGC TGGTGGTCAA GGCGCGCGAA
GACATGGCCG CCATCTTCAC CACGCTCAAG CTGCCGCTGC CGCTGACCGA CGCGCTGGTC
ACCCAGCTGC GTGGCGTGGT CAACGGCATC AAGGACCACG AGCGCAAGGT GCTGCACCTG
GCCACCACCG TGGCCCGCAT GCCGCGCAAG GATTTCATCC GCTCCTGGGA AGGCAATCAG
ACCAACCTAG AATGGGTGGA AGATGCACTC AAGCGCAAGC AGAAGTGGTC GTCGGCGCTG
CGCGACGTCA AGGATCAGAT CATCTCCGAG CAGCAGGGCT CGATGGAGAT GGAAAAGGCC
AGCTATCTGA CGCTGGGCGA GATCAAAGAG ATCAGCCGTG CGATGGCCTA TGGCGAAGCC
AAGGCGCGCA AGGCCAAGAA GGAAATGGTC GAAGCCAACC TGCGTCTGGT GATCTCGATT
GCCAAGAAGT ACACCAACCG CGGCCTGCAG TTCCTCGACC TGATCCAGGA AGGCAACATC
GGCCTGATGA AGGCCGTGGA CAAGTTCGAA TACCGTCGCG GTTACAAGTT CTCGACGTAT
GCAACGTGGT GGATCCGTCA GGCCATCACC CGTTCGATCG CCGATCAGGC GCGCACCATC
CGTATCCCGG TGCACATGAT CGAAACGATC AACAAGCTGA ACCGCATTTC CCGCCAGATG
CTCCAGCAGT TTGGCCGCGA GGCGACGCCG GAGGAATTGG CCAAGGAAAT GGACATGCCC
GAGGACAAGA TTCGCAAGGT GATGAAAATC GCCAAGGAGC CGATCTCGAT GGAAACCCCG
ATCGGCGACG ACGAGGATTC GCATCTGGGC GACTTCATCG AGGACACCAA TGTGGAGTCC
CCGATCGACA ACACCACCAA CATCAATCTC TCCGAGACGG TGCGTGACGT GTTGGCCGGC
CTCACCCCGC GCGAGGCCAA GGTGCTGCGC ATGCGCTTCG GTATCGATAT GAACACCGAT
CACACGTTGG AAGAGGTCGG TAAGCAGTTC GATGTCACCC GCGAGCGGAT TCGTCAGATA
GAGGCCAAGG CATTGCGCAA GCTGCGTCAC CCGAGCCGCT CGGAACAGCT GCGCTCGTTC
CTGGATATCG ACTGA
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| Protein sequence | MANERPAQQS DIKLLISKGL EQGYLTYAEV NDHLPDDLVD PEQIEDIISM INGMGIDVHE
VAPDAETLLL NDGNTGNREV DDTAAEEAAA ALTALDTEGG RTTDPVRMYM REMGTVELLT
REGEIAIAKR IEEGLSQVQA ALGVFPLSTE MLLADYEAHK EGKKRLAEIV VGFNDLIEEA
DAAAAALAAA GPVAVDEDAL DEDDDEDGDD AAAEEEVGPT GPDPVEVATR MQNLANEYAK
FKKVYAKNGA EHKLVVKARE DMAAIFTTLK LPLPLTDALV TQLRGVVNGI KDHERKVLHL
ATTVARMPRK DFIRSWEGNQ TNLEWVEDAL KRKQKWSSAL RDVKDQIISE QQGSMEMEKA
SYLTLGEIKE ISRAMAYGEA KARKAKKEMV EANLRLVISI AKKYTNRGLQ FLDLIQEGNI
GLMKAVDKFE YRRGYKFSTY ATWWIRQAIT RSIADQARTI RIPVHMIETI NKLNRISRQM
LQQFGREATP EELAKEMDMP EDKIRKVMKI AKEPISMETP IGDDEDSHLG DFIEDTNVES
PIDNTTNINL SETVRDVLAG LTPREAKVLR MRFGIDMNTD HTLEEVGKQF DVTRERIRQI
EAKALRKLRH PSRSEQLRSF LDID
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