Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_03711 |
Symbol | rpoH |
ID | 6304016 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | + |
Start bp | 518368 |
End bp | 519216 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642637801 |
Product | RNA polymerase factor sigma-32 |
Protein accession | YP_001911686 |
Protein GI | 188574757 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGCAAACA ATCTCCCGAT TCCCAGTGCG CTCGGTTCGC TGGACGCCTA CATCGGTGCC GTGCACCAGA TTCCGGTGCT GTCGGTCGAT GAGGAGCAGA ATCTGGCCCG CCGCTTCCGC GACGAGCTGG ATTTGGACGC CGCGCGCGAA CTGGTCCATT CCCACCTGCG CTTCGTGGTG CATGTGGCCC GCGGCTATAA CGGCTACGGC CTGCCGCTGG GCGACCTGAT CCAGGAAGGC AATATCGGCC TGATGAAGGC GGTCAAGCGC TTCGACCCGG ACATGGGCGT GCGTTTGGTC AGCTTCGCGG TGCACTGGAT CCGTGCCGAA ATGCACGAGT TCATCCTGAA GAACTGGCGC ATCGTCAAGG TTGCCACGAC CAAGGCGCAG CGCAAGCTGT TCTTCAACCT GCGCAAGTCC AAGACCCGTC TGGGCTGGCT CAATGCGTCG GAAGTGACTG CGGTCGCCAA GGACTTGAAC GTCTCAGAGC GTGAAGTGAT GGAGATGGAG TCGCGTCTGT CTGGTCGCGA CATCGGTTTC GACGCCTCGT CCGACGAAGA CGACGATCAC GGCCCGCCGT CGCCGGTGAG CTACCTGGTC GCCAACGAAG AAGACCCGTC GCAGGCGTAC GAGCGCCACG ACAGCGAAGA CAACCAGTTG CAGTTGCTGC GCGAAGGCAT GGCCGGTCTG GATACGCGTT CGCGCGACAT CGTCAAGCGT CGCTGGCTGG ATTCGGATTC CAAGGTGACG CTGCAGGAGC TGGCCGATGA GTACGGCGTG TCGGCCGAGC GTATCCGCCA GATCGAGGCG AATGCGCTGA AGAAGATGAA GGCGCTGTTC GTCGCCTGA
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Protein sequence | MANNLPIPSA LGSLDAYIGA VHQIPVLSVD EEQNLARRFR DELDLDAARE LVHSHLRFVV HVARGYNGYG LPLGDLIQEG NIGLMKAVKR FDPDMGVRLV SFAVHWIRAE MHEFILKNWR IVKVATTKAQ RKLFFNLRKS KTRLGWLNAS EVTAVAKDLN VSEREVMEME SRLSGRDIGF DASSDEDDDH GPPSPVSYLV ANEEDPSQAY ERHDSEDNQL QLLREGMAGL DTRSRDIVKR RWLDSDSKVT LQELADEYGV SAERIRQIEA NALKKMKALF VA
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