| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_03340 |
|---|
| Symbol | |
|---|
| ID | 6303670 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 144695 |
|---|
| End bp | 145990 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642637463 |
|---|
| Product | ABC transporter permease |
|---|
| Protein accession | YP_001911348 |
|---|
| Protein GI | 188574419 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGGCAACG CGCTGTCGAT CCTGCTGATG GTGGTGGGCC TGGGCGTGTG GATCGCGCTG
CCATGGATCG GCGTGCTGGC GGTGGCTGTG GCGCTAATGC TGTGGCTGCT GCTGACCCGC
AGCGGTCGGC TATCGCTGGC TGCCGCGCGC ATCGGCATCG CCAGCCTTCC GCAGCGCTGG
GGCGCGAGTT CGGTGATCGT GGTCGGCATC GCCGGTGTGG TCGGCGTGCT GGTGGCGATG
TTGGCGATGG GACGCGGTTT TGAAGTCACG CTCAACAGCA CCGGCGACGA CACCACGGCG
ATCGTGCTGC GCGGCGGTTC GCAGGCGGAG ACCAACTCAG TGATCACCCG CGACTTGGTG
CCTCTGGTCA GCGCGCTACC CGGCATCGCC AAGGACGTGC AGGGTCGCGC GATGATCTCG
CCGGAGCTGT CGCAGGTGGT CAACCTGGTC TCCAAGTCCG ACGGCACCGA CGTGAATGCG
CAGTTCCGCG GCGTCGGCGA GCAGGGTTGG GCGGTGCACG ACAAGGTTAA GATCGTCGAT
GGCCGGCGCT TCGGCACCGG CCTGCGCGAG ATCGTGGTCG GCAAGGGCGC GCAGAACCAG
TTCCGCGGGC TGGATGTCGG CAGAACGCTG AGCCTGGGCA ACCAGACCTG GACCGTGGTC
GGCGTGTTCG CTTCCGGCGA TGCGCACGAT TCGGAGCTGT GGACCGATGC GCAGACCCTG
GCCAGCACCT ACCAGCGCAG CGCCTGGCAG TCGATCAGCG CGCGCACCGA GGGCAAGGCC
GGCTTCGACC GGTTCAGGGC CGCGATGGCC GCCGACCCAC GGCTCAAGCT CGACGTCGAT
ACCACGCGCA GCTACTACGG CAAGCAGGGC GGCGGGCTGA GCAAGCTGAT CGGTATCCTC
GGCACGGTGA TCGGCGCGAT CATGGCGGTC GGTGCGGTGT TCGGCGCACT CAACACCATG
TACGCGGCGG TGGCCACGCG TGTACGGGAG ATTGCCACGA TGCGCGCGCT TGGCTTCCGC
AGTACGCCGG TGGTGATGGC GGTGATGCTG GAGACAATGC TGCTGGCGCT GCTCGGCGGC
GTACTGGGTG GCGCGATTGC ATGGGCGGTG TTCAACGGCT ACAGCGTGTC CACACTGGGC
AGCAACTTCA GCCAGGTGGT GTTCCAGTTC AAGGTCTCGC CGGAGTTGCT GTGGAGCGGG
CTGAAGTGGG CGCTGGGAAT CGGGCTGGTC GGCGGCCTGT TTCCTGCCCT GCGTGCTGCA
CGGCTGCCGA TTACCACCGC ACTGCGCGAG GTATGA
|
|---|
| Protein sequence | MGNALSILLM VVGLGVWIAL PWIGVLAVAV ALMLWLLLTR SGRLSLAAAR IGIASLPQRW
GASSVIVVGI AGVVGVLVAM LAMGRGFEVT LNSTGDDTTA IVLRGGSQAE TNSVITRDLV
PLVSALPGIA KDVQGRAMIS PELSQVVNLV SKSDGTDVNA QFRGVGEQGW AVHDKVKIVD
GRRFGTGLRE IVVGKGAQNQ FRGLDVGRTL SLGNQTWTVV GVFASGDAHD SELWTDAQTL
ASTYQRSAWQ SISARTEGKA GFDRFRAAMA ADPRLKLDVD TTRSYYGKQG GGLSKLIGIL
GTVIGAIMAV GAVFGALNTM YAAVATRVRE IATMRALGFR STPVVMAVML ETMLLALLGG
VLGGAIAWAV FNGYSVSTLG SNFSQVVFQF KVSPELLWSG LKWALGIGLV GGLFPALRAA
RLPITTALRE V
|
|---|
| |