Gene PXO_03310 details

Gene Information

• Locus tag: PXO_03310
• ID: 6308494
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: -
• Start bp: 5090375
• End bp: 5092252
• Gene Length: 1878 bp
• Protein Length: 625 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 642642210
• Product: GAF domain protein
• Protein accession: YP_001916035
• Protein GI: 188579106
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.0453757
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATGTCT GCGCACGGGA GCCGATCCAC ATTCCCGGCC TGATCCAGCC CTACGGCGTG 
TTGCTCGTAA TCGAACCGGC CGATGGCCGC ATCGTGCAGG CCAGCAGCAC CGCCGCCGAG 
TTGCTCGGCG TGCCGATGGA TGCGCTGCTG GGCATGGCCT ACACCCAGGT GCTGGAGATG 
CCGGACGCAC AACCTGGTGC AGTGGACGAT CAACCCCAGC ATGTGCTGCA TGCCGATGTG 
CGCTTCCCGC AGCGCAGTGC GCCCACCGAT CACCCCTGGG TCGCTGCCTG GCATTTGTAT 
CCGGAGCAAT GGCTGATCGA GATCGAGCCG CGCGATGCGC GCCTGATGGA TGTCACCCTG 
CGCGAAGCGC TGCCGCTGTT GCGCAGCATC GAGCGCGATG CGGGCATTGA AGAAGCGTCA 
GTGCGCGCGG CCAAGGGCCT GCGCAGCATG ATCGGCTTCG ACCGCGTGAT GGTGTATCGC 
TTCGACGAAG AGTGGAATGG CGACGTCATC GCCGAAGCGC GCCAGCCCGA GCTGGAGGCG 
TACCTGGGCC TGCATTACCC GGCCAGCGAC ATCCCGGCGC AGGCGCGCGC GCTGTACCTG 
CGCAACCGCG TGCGCCAGAT CGCCGATGTG CGCTATCAGC CCTCGCCGAT CCAACCCACC 
TTGCACCCGC GCCTGGGTAC ACCGGTGGAT CTGAGCGATG TCAGCCTGCG CAGCGTCTCG 
CCGGTGCATC TGGAATACCT GGCCAACATG GGCGTCAGCG CCACCCTGGT GTCGTCGATC 
GTGGTCAACG ATGCGCTCTG GGGGCTGATT TCCTGCCACC ACTACAGCCC GCACTTCACC 
AGCCATGCCA TGCGCGATGC CACCGATGCG GTTACCCGCG CGCTGGCCGG GCGCATCGGC 
GCGCTGCAGG CGGTGGGGCG GGCGCGGTTG GAGTCGGTGT TGCTCACCAT CCGCGAAAAA 
CTGATCACCG ACTTCAACGA TGCCGAGCAC CTGACCGTGG ACATGCTCGC CGACATGGCC 
CCGGACCTGA TGGACGTGGT CGACGCCGAC GGCGTGGCAA TCTTCCATGG CAACGAGATC 
AGCCGTCATG GCAGCGTGCC GGATGCCGAT GCGCTGCGTC GCATCCGCGA CCACATCGAA 
TCCGAACACC ACGACGCCCT GCGCGCGGAC GCAGTCGGCG CGCTGCACGT GGATGCCATC 
GGCGAGGTAT TTCCGGAGCT GGCCGATCTC GCGCCGCTGG CCGCCGGCTT CATCTTCGTG 
CCGCTGATGC CGCAATCGCG CAGCGCCCTG TTGTGGACCC GCCGCGAGCA GGTGCAGCAG 
GTGAAATGGG CCGGCAACCC GCAGCTGGCC AAGCTGCAGG ACATCCCCAA CTCGCGGCTG 
TCGCCGCGCA AGAGTTTCGA TCTGTGGCAG CAGACCGTGC GCGGACGCGC GCGACGCTGG 
TCGCCGCTGC ATCTGGAATC GGCACGCAGC CTGCGCGTGC TGATCGAACT GATGGAACGC 
AAGCGCTTCC AACAGGATTT CTCCCTGCTC GAAGCCTCGC TGTCGCGGTT GCGCGACGGA 
GTGGCCATCA TCGAACGCGG CGCCAACGCC GCTGCGCACC GGCTGATGTT CGTCAACCCG 
GCGTTCGCCG ACCTCAGTCA GACCGAGGTG GCCGACTTGA TCGGCTGCGA CATCCTCGCC 
TTGCTGGCCG ACGATGCTGA GCGGGGCAAG GTCGAACTGC TGGAAGAAGC GCTGCGCCTG 
GGCCGCGCCG CCTACGTCAC CCTGCCACTG CGCACCCAGG GTGGCGAGCC GGCATATCGC 
CAATTCCATC TCGAACCCTT GCCCAGCTCC AGCGGCGTGA CCGCGCACTG GCTGCTGCAA 
TTACGCGATC CGGAATAA 

 

Protein sequence

MDVCAREPIH IPGLIQPYGV LLVIEPADGR IVQASSTAAE LLGVPMDALL GMAYTQVLEM 
PDAQPGAVDD QPQHVLHADV RFPQRSAPTD HPWVAAWHLY PEQWLIEIEP RDARLMDVTL 
REALPLLRSI ERDAGIEEAS VRAAKGLRSM IGFDRVMVYR FDEEWNGDVI AEARQPELEA 
YLGLHYPASD IPAQARALYL RNRVRQIADV RYQPSPIQPT LHPRLGTPVD LSDVSLRSVS 
PVHLEYLANM GVSATLVSSI VVNDALWGLI SCHHYSPHFT SHAMRDATDA VTRALAGRIG 
ALQAVGRARL ESVLLTIREK LITDFNDAEH LTVDMLADMA PDLMDVVDAD GVAIFHGNEI 
SRHGSVPDAD ALRRIRDHIE SEHHDALRAD AVGALHVDAI GEVFPELADL APLAAGFIFV 
PLMPQSRSAL LWTRREQVQQ VKWAGNPQLA KLQDIPNSRL SPRKSFDLWQ QTVRGRARRW 
SPLHLESARS LRVLIELMER KRFQQDFSLL EASLSRLRDG VAIIERGANA AAHRLMFVNP 
AFADLSQTEV ADLIGCDILA LLADDAERGK VELLEEALRL GRAAYVTLPL RTQGGEPAYR 
QFHLEPLPSS SGVTAHWLLQ LRDPE