| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_02686 |
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| Symbol | gspD |
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| ID | 6307946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 4555363 |
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| End bp | 4557663 |
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| Gene Length | 2301 bp |
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| Protein Length | 766 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642641675 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001915512 |
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| Protein GI | 188578583 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.91159 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCCGC GCCTGTTTCC CGTATCCCTG CTGATTGGCC TGCTGGCCGG TTGCGCCACC
ACTCCGCCGC CGGACGTGCG CCGCGACGCA CGCTTGGATC CGAACGTCGG CGCTGCCGGC
GCCACTCAAA CCACCGCCGA GCAGAGTGCC GACGGTAAGG CCAGCGCCAA GCCCAGCCCG
GTGATCCGGC GCGGCAGCGG CACCATGATC AACCAGAGCG CCGCGTCCGC GCCGGCGCCC
ACGCTGGGCA TGGCCAGCAG CGGCAGCGCT ACCTTCAATT TCGAAGGCGA ATCGGTGCAG
GCCGTGGTCA AGGCCATCCT GGGCGATATG CTTGGTCAGA ACTACGTCAT CGCGCCCGGC
GTGCAGGGCA CCGTGACCCT GGCCACGCCC AATCCGGTCT CGCCCGCGCA GGCGCTGAAC
CTGCTGGAGA TGGTGCTGGG CTGGAACAAT GCCCGCATGG TGTTCAGCGG TGGCCGCTAC
AACATCGTGC CGGCCGACCA GGCATTGGCC GGCACCGTCG CGCCCAGCAC CGCCTCGCCC
TCGGCCGCGC GCGGTTTCGA GGTACGCGTG GTGCCGCTGA AGTACATCTC GGCCAGCGAA
ATGAAGAAGG TGCTCGAGCC CTATGCGCGC CCGAATGCCA TCGTCGGTAC CGACCCGGCG
CGCAACGTGA TCACCCTGGG CGGTACCCGC GCCGAGCTGG AAAACTACCT GCGCACCGTG
CAGATCTTCG ACGTGGACTG GTTGTCGGGC ATGTCGGTGG GCGTGTTCCC GATCCAGTCC
GGCAAGGCCG AAAAGGTCAG CGCCGATCTG GAGAAGGTAT TCGGCGAGCA GAGCAAGACC
CCCAGCGCCG GCATGTTCCG CTTCATGCCG CTGGAAAACG CCAATGCCTT GCTGGTGATT
ACTCCGCAGC CGCGCTACCT GGACCAGATC CAGCAGTGGC TGGACCGTAT CGACAGTGCC
GGCGGCGGGG TACGGCTGTT TTCGTACGAG TTGAAGTACA TCAAGGCCAA GGACCTGGCG
GATCGTCTGT CGGAAGTGTT CGGCGGCCAC AGCAGCGGCG GCGATTCCAA TGCATCGCTG
GTGCCAGGGT CGGAAACCAG CGTGCTTGGC GGCGCGCTCG GCAATCGCGA CAGCAGCATG
GGTGGCAGCT CCGGCATGAC CGGCGGCAGC ATCGGCGACA GCGGCGATGG CAGCTCGTCG
GGCAGCAGCT TCGGCAGCAG TGGAGGTGGC AGCAGCAGTG GTGGTCTGGG TAACGGCAGC
CTGCAGCTGT CGCCGCGCAG CAATGGCAAC GGCGCGGTGA CGCTGGATGT GGCCGGCGAC
AAGGTGGGTG TATCGGCGGT GGCCGAGACC AATACCTTGC TGGTGCGCTC CACGCCGCAG
GCCTGGAGCT CGATCCGCGA TGTCATCGAA AAGCTCGACG TGATGCCGAT GCAGGTGCAT
ATCGAAGCGC AGGTGGCCGA GGTGAATTTG ACTGGCAAGC TGCAGTATGG TGTGAATTGG
TACTTCGAGA ACTCGGTGAA TGCTGCAGCG GATTCGGCCG CCAATAGCAC CGGCATTGGC
GCTGGTGCCG GCTTGGCAAG CGCAGCAGGG AGAAACATTT GGGGAGATAT CGCTGGGAAA
ATCACCGGTG AAAAAGGCGC TCAGTGGACG TTCTTGGGCA AGAATGCGGC CTCGATCATC
CATGCACTTG ATGAGGTGAC TAATGTGCGT CTTCTGCAAA CGCCTTCTGT TTTTGTACGC
AACAACGCCG AGGCAACGCT GAATGTTGGC TCACGTATTG CGATCAATTC GACGTCTATC
AATACCGGTC TCGGAAGCGA CAGCAGCTTT TCCTCGGTGC AGTACATCGA CACTGGCGTA
ATCCTGAAAG TGCGTCCGCG TGTGACCAAG GACGGCATGG TGTTCTTGGA TATCGTGCAG
GAAGTCAGTA GTCCTGGTGA TCGTCCCGCT GCCTGTACTT CGGCTACTGC GACGGTCAAT
GCCGCCGCTT GTAACGTTGA TATCAATACG CGCCGTGTAA AGACGGAAGC TGCCGTGCAG
AGCGGCGATA CGATCATGTT GGCCGGTCTG ATCGACGATA CGACCAGTGA TGGCAGTAAC
GGAATTCCCT TCCTGAGCAA GCTACCGGTT GTTGGCGCGC TGTTTGGATC CAAGAGCCGT
AACAGCGCCC GCCGCGAAGT CATCGTGCTG ATCACTCCCT CGATCGTGCG CAACCCGCAG
GAAGCGCGCA ATCTCACCGA CGAATATGGT CAGAAATTCA AGGCCATGGA GCCGCTGAAG
CCCAGCCAGA AACCGCAATG A
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| Protein sequence | MTPRLFPVSL LIGLLAGCAT TPPPDVRRDA RLDPNVGAAG ATQTTAEQSA DGKASAKPSP
VIRRGSGTMI NQSAASAPAP TLGMASSGSA TFNFEGESVQ AVVKAILGDM LGQNYVIAPG
VQGTVTLATP NPVSPAQALN LLEMVLGWNN ARMVFSGGRY NIVPADQALA GTVAPSTASP
SAARGFEVRV VPLKYISASE MKKVLEPYAR PNAIVGTDPA RNVITLGGTR AELENYLRTV
QIFDVDWLSG MSVGVFPIQS GKAEKVSADL EKVFGEQSKT PSAGMFRFMP LENANALLVI
TPQPRYLDQI QQWLDRIDSA GGGVRLFSYE LKYIKAKDLA DRLSEVFGGH SSGGDSNASL
VPGSETSVLG GALGNRDSSM GGSSGMTGGS IGDSGDGSSS GSSFGSSGGG SSSGGLGNGS
LQLSPRSNGN GAVTLDVAGD KVGVSAVAET NTLLVRSTPQ AWSSIRDVIE KLDVMPMQVH
IEAQVAEVNL TGKLQYGVNW YFENSVNAAA DSAANSTGIG AGAGLASAAG RNIWGDIAGK
ITGEKGAQWT FLGKNAASII HALDEVTNVR LLQTPSVFVR NNAEATLNVG SRIAINSTSI
NTGLGSDSSF SSVQYIDTGV ILKVRPRVTK DGMVFLDIVQ EVSSPGDRPA ACTSATATVN
AAACNVDINT RRVKTEAAVQ SGDTIMLAGL IDDTTSDGSN GIPFLSKLPV VGALFGSKSR
NSARREVIVL ITPSIVRNPQ EARNLTDEYG QKFKAMEPLK PSQKPQ
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