Gene PXO_02621 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPXO_02621 
SymbolraxC 
ID6307867 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthomonas oryzae pv. oryzae PXO99A 
KingdomBacteria 
Replicon accessionNC_010717 
Strand
Start bp4470839 
End bp4472170 
Gene Length1332 bp 
Protein Length443 aa 
Translation table11 
GC content62% 
IMG OID642641598 
Productouter membrane protein required for AvrXa21 activity C (raxC) 
Protein accessionYP_001915436 
Protein GI188578507 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGGCGA ACGCCACCGA CCTGCTGCAG GTCTACGAAA TGGCGCGCAA CGGTGATCCG 
CAGCTGGCCG TGGCCGAGTC CACGCGCCTG GTGAATCGGG AAGGTCAGGT ACAGGCGCGT
GCGGCGTTGC TGCCGCAGCT GGACGGCAGC GCCGGATACA CCCAGTCGCA TCGTGAGCTG
GAGGGCGTCG GACGCCCCAC GACCAAACAG CGCCAGTACG CGATTCAGGG TAGCCAGACC
ATTTTCAATT GGGCGCAGTT CTCTAACCTG CGCGCGCAGC GCGAAGTGAC CAGGGCTGCA
GATTTCACTT TGGCATCGGC CAACAACGAT CTGATGACGC GTACCTCGGC GGCGTATTTC
CAGGTACTGG TGGGGATCGA GTCGCTGGCG GCAGCCGAGA CCAACGAAGC GGCAGCAAAG
AAGCAATTCG ACTACGCCGA CAAGCGTCTG GAAGTGGGCC TGGCACCGAT CACCGACGTG
CACGAAGCCC GCGCTCAGTA CGACCAGGCG CGCGCCGACA CCATCAACGC CCGCAACACG
TTGAAGGATT ACTACCAGGC ACTGACTGAA CTCACCGGCC AGCCCGTAGT TGGTTTGCGT
GCATTGCCCG ACGAGTTCCG CCCGGAAGTG CCGGCCGCTT ATAGCAATGT CGATCAGTTG
GTCGCTACCG CCATTGCCGA TAATCCCGCG TTGAGGGCGC AGCAGTTGCA GGTCAGTGCC
GCCGAGGCAC ACGTCAGTGC TGCGCGTGCC GGCCATCTGC CGACCCTCAA TCTTTCCGGC
AGCATGGGAC GGACCAATAG CTGGGGCGGT GGCAGCGATG TCGATACAGC TGCCGGCAAT
TTCATGACCA ATAATGGCAA TATCGATACC AATTCCATCG GCATCACCCT ATCGATTCCG
ATCTTCTCGG GTGGTGCGAC CCAGTCGGCC GTGCGTCAGG CCCTGTCGCA GCGCGACATC
CAGCAGGACA TCTACGAGCA GCAGAAGCGC GCGCTGGATC GCAACACGCG CAATGCCTAC
CAGACCGTGG TTGCCGGCAT CAGCGAAGTG GAAGCCCGCC GTCTGGCCGT GGTGTCGGCG
CAAGCCGCCT ACGACGCCTC GCAGGTGGGC CTGGAAGTCG GTACGCGTAC CGTGCTGGAT
GTCGTGCAGA ACCAGCGCAC GCTGTTCCAG GCGCAGCTGA ACTACGCGCA GTCGCGTTAC
ACCTTCCTGC AGAACCGACT GCTGCTTGGT CAAGCCATCG GCAAGCTCGA CATCACCGAC
TTGCAGGATG TGAATCGCCT GCTGTCGCAG GATGCCGAGT CCAAGCTGCA GGGCAGTGGT
TCGTTGCAGT AA
 
Protein sequence
MAANATDLLQ VYEMARNGDP QLAVAESTRL VNREGQVQAR AALLPQLDGS AGYTQSHREL 
EGVGRPTTKQ RQYAIQGSQT IFNWAQFSNL RAQREVTRAA DFTLASANND LMTRTSAAYF
QVLVGIESLA AAETNEAAAK KQFDYADKRL EVGLAPITDV HEARAQYDQA RADTINARNT
LKDYYQALTE LTGQPVVGLR ALPDEFRPEV PAAYSNVDQL VATAIADNPA LRAQQLQVSA
AEAHVSAARA GHLPTLNLSG SMGRTNSWGG GSDVDTAAGN FMTNNGNIDT NSIGITLSIP
IFSGGATQSA VRQALSQRDI QQDIYEQQKR ALDRNTRNAY QTVVAGISEV EARRLAVVSA
QAAYDASQVG LEVGTRTVLD VVQNQRTLFQ AQLNYAQSRY TFLQNRLLLG QAIGKLDITD
LQDVNRLLSQ DAESKLQGSG SLQ