| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01924 |
|---|
| Symbol | cobT |
|---|
| ID | 6307387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 3995025 |
|---|
| End bp | 3996071 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642641128 |
|---|
| Product | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
|---|
| Protein accession | YP_001914976 |
|---|
| Protein GI | 188578047 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2038] NaMN:DMB phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.573566 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGTAACG ATTGGATCTT TGGTGCCTGC GCCGTGCCGG ACGCGCGGAT GCGCTCTGCT
GCGTTGGCCC GGCAGGAACA ACTGACCAAA CCGCCGGGCG CATTGGGCCG GCTGGAACAA
CTGGCCGTGC AAGTGGCGGC CTGGCAACGT ACCGAACATC CTGCGGTGCA GCGGGTCTGG
ATTGCGGTGT ATGCCGCCGA TCATGGTGTG GCGGCCGAAG GCGTGTCGGC ATTTCCGCAG
GCAGTCACCG GCGAGATGGT GCGCAATTTC GCGCGCGGCG GCGCGGCTAT TGCGGTCCTG
GCGCGCGAGC TGGGTGCGCG GCTGGAAGTG GTGAATCTGG GGGTTGTCAA CGACCCCGGC
GACTTGTCGC GCGTGCGGCG TGCCTGGATT GCGCCGTCCA CTGCCAATAT CTGCGAGCAG
CCCGCGATGA CGGCCACGCA ATTGCGCGAT GCGCTCGCCG CTGGTGCCCA CAGCATTGCG
CAGGCCAAGA GTTGCGACAC GCAGCTGTTT GTCGGCGGCG AAATGGGCAT TGGCAACACC
ACCGCCGCTG CAGCGCTGGG CTGCGCGTTG CTCTCGCAGT TTCCGCAGGC GCTGGCTGGC
GCAGGCACCG GCCTGGATGC CGAAGGCATC GCGCACAAGG TCACCGTGAT CACGCGTGCG
CTGGCCTTGC ATGCCGATGC CTCCACCCCG CTGGAGCGTC TGCGCCGGCT CGGCGGATTC
GAAATCGCGG CATTGGTCGG CGCGTATATC GCTGCGGCGC AGGCGGGCAT TCCGGTGTTG
GTGGATGGCT TCATCGCCAC CGCCGCGGCA TTGGTGGCTA CCCGCCTGAA CCCCGGCGTG
CGCGAGTGGT TGTTGTTCGG GCACCGTTCG CAGGAGCGCG GGCATGCGGC ACTGCTGCGT
GCGCTGGATG CAGAGCCCTT GCTGCAACTG GACCTGCGGC TGGGAGAAGC CAGCGGCGCC
GCGGTGGCGA TTCCGTTGCT GCGCAGCGCC TGCGCGTTGC ATAACGGCAT GGCGACCTTC
GCCGAAGCCG GAGTGTCGGA CGCATGA
|
|---|
| Protein sequence | MSNDWIFGAC AVPDARMRSA ALARQEQLTK PPGALGRLEQ LAVQVAAWQR TEHPAVQRVW
IAVYAADHGV AAEGVSAFPQ AVTGEMVRNF ARGGAAIAVL ARELGARLEV VNLGVVNDPG
DLSRVRRAWI APSTANICEQ PAMTATQLRD ALAAGAHSIA QAKSCDTQLF VGGEMGIGNT
TAAAALGCAL LSQFPQALAG AGTGLDAEGI AHKVTVITRA LALHADASTP LERLRRLGGF
EIAALVGAYI AAAQAGIPVL VDGFIATAAA LVATRLNPGV REWLLFGHRS QERGHAALLR
ALDAEPLLQL DLRLGEASGA AVAIPLLRSA CALHNGMATF AEAGVSDA
|
|---|
| |