| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01684 |
|---|
| Symbol | sdaA |
|---|
| ID | 6306634 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 3207083 |
|---|
| End bp | 3208489 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642640388 |
|---|
| Product | L-serine ammonia-lyase |
|---|
| Protein accession | YP_001914245 |
|---|
| Protein GI | 188577316 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1760] L-serine deaminase |
|---|
| TIGRFAM ID | [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.737007 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACGCTCA CCTCTCCGGC ACGCATGGCT GTCAGCACGT TCGACCTGTT CAAGATCGGT
ATCGGTCCGA GTTCCTCACA CACCGTGGGG CCGATGCGCG CCGCCGAGCG CTTCGTGCAT
CGCTGGCTGC TCGATGCCGG GCGCCTGCAG GACGTGATGC GCCTGCGCGC CGAAGTGTTC
GGCTCGCTGG CCCTGACCGG CCGCGGCCAT GGCACCGACA AGGCGGTGCT GCTGGGGCTG
GAAGGCCACC GCCCGAACCT GATCGACCCG GACATCATCC CGGCCGTGCT GGAGCGCATC
CGCACCAGCA AGCGCATCAG CTTGATGGGC CAGCACGAGA TCAGCTTCGA GGAAAAGCGC
GACTTGCCGA TGAACAAGCG GCAGAAGCTG CCGTACCACA CCAACGGCAT GCGCTTCACC
GCTTACGACG CCGATGAAGG CGTGATCGCC ACACGCGATT ACTACTCGGT GGGCGGCGGT
TTCGTGGTCA ACCAGGACGA TGCTGCCGAC GATCGCATCG TGGCCGACGA AACGCCGCTG
CCCTACCCGT TCTTCAGTGG CGACGAACTG CTGGCGCAAT GCGCGCGCAG CGGATTGAGC
ATTGCCGCAC TGATATTCGA AAACGAAAAA AGTTGGCGCA GCGAAGACGA GATCCGTGCG
GGCCTGCGCG AGGTATGGAA GGCAATGCAG TCCTGCGTGG AGCGCGGCAT CCGCCAAGAA
GGCACCCTGC CTGGCAGCCT GAATGTCTCG CGGCGCGCAC CGGCGCTGTA CCGCGAGCTG
TCCTCCAAGC CGGAAGCGGC CATGCGCGAC CCGTTGACGA CGCTGGACTG GGTCAACCTG
TACGCACTCG CAGTCAATGA AGAAAACGCC GCCGGCGGCC GTGTCGTCAC CGCCCCGACC
AATGGTGCGG CCGGCATCAT CCCGGCGGTG CTGCATTATT TCGATCGATT CTGTGCGGGC
GCCTCCGAGC AACGCATCTT CGACTTCCTG CTGACTGCTG CTGCGATCGG CATCCTGTAC
AAGGAAAACG CCTCGATTTC CGGCGCCGAG GTCGGCTGCC AGGGTGAGGT GGGCGTGGCC
TGTTCGATGG CAGCTGGCGG CCTGGTTGCT GCGCTTGGCG GCAACCCGGG GCAGATCGAA
AACGCGGCGG AAATCGGCAT GGAACATAAT CTGGGTCTGA CCTGCGACCC GATTGGCGGC
CTGGTGCAAA TCCCATGCAT CGAACGCAAC GCGATGGGCG CAGTGAAAGC CATCAACGCC
AGCCGCATGG CCATGCGTGG CGACGGCAAG CACAAGGTCT CGCTGGACAA GGTCATCAAG
ACCATGCGCG ATACCGGCCG CGACATGCAG GACAAGTACA AGGAAACCAG CCGCGGCGGC
CTGGCGGTGA ATGTCATCGA ATGCTGA
|
|---|
| Protein sequence | MTLTSPARMA VSTFDLFKIG IGPSSSHTVG PMRAAERFVH RWLLDAGRLQ DVMRLRAEVF
GSLALTGRGH GTDKAVLLGL EGHRPNLIDP DIIPAVLERI RTSKRISLMG QHEISFEEKR
DLPMNKRQKL PYHTNGMRFT AYDADEGVIA TRDYYSVGGG FVVNQDDAAD DRIVADETPL
PYPFFSGDEL LAQCARSGLS IAALIFENEK SWRSEDEIRA GLREVWKAMQ SCVERGIRQE
GTLPGSLNVS RRAPALYREL SSKPEAAMRD PLTTLDWVNL YALAVNEENA AGGRVVTAPT
NGAAGIIPAV LHYFDRFCAG ASEQRIFDFL LTAAAIGILY KENASISGAE VGCQGEVGVA
CSMAAGGLVA ALGGNPGQIE NAAEIGMEHN LGLTCDPIGG LVQIPCIERN AMGAVKAINA
SRMAMRGDGK HKVSLDKVIK TMRDTGRDMQ DKYKETSRGG LAVNVIEC
|
|---|
| |