| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01638 |
|---|
| Symbol | |
|---|
| ID | 6306677 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 3258826 |
|---|
| End bp | 3261495 |
|---|
| Gene Length | 2670 bp |
|---|
| Protein Length | 889 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642640430 |
|---|
| Product | glucan 1,4-beta-glucosidase |
|---|
| Protein accession | YP_001914287 |
|---|
| Protein GI | 188577358 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTGT CCGTCTTTCC GTGCCGTCTT GCCGCCGCAC TGAGTGTGGG TCTGGCTCTG
CCGCTCATCG CTGCACCGGC AGTGTCCGCA AAAAACACCG ATGCAACGCC CGAACAACGT
GCCGCCGACC TGGTGGCGCA CATGAGCCGC GAAGAAAAAG TGGCGCAGGC CATGAACGAT
GCGCCTGCAA TTCCGCGCTT GGGCATCCCC GCCTATGAGT GGTGGAGCGA GGGCCTGCAC
GGCATCGCCC GCAACGGTTA TGCCACGGTG TTTCCACAAG CCATTGGCCT GGCGGCGAGC
TGGAATACCC ATCTCATGCA GCAAGTGGGC ACGGTGGTCT CTACCGAAGC GCGCGCCAAG
TTCAACCAGG CCGGTCGCCC GGGCAAGGAC CACAAGCGCT ACGCCGGTCT CACCATCTGG
TCGCCCAACA TCAATATCTT CCGCGACCCG CGCTGGGGCC GTGGCATGGA AACGTACGGC
GAAGACCCGT TCCTCACCGG ACAGATGGCA GTGGGCTTTA TCCACGGCCT GCAGGGCGAT
GACCTCGACC ACCCGCGCAC GATCGCCACG CCCAAGCACC TCGCCGTGCA CAGCGGGCCC
GAGCCGGGCC GGCATGGATT CGATGTCGAT GTGTCGCCAC GCGATGTGGA AGCGACCTAT
ACGCCGGCCT TCCGCGCTGC CATCGTCGAA GGACAGGCCG GCGCGGTGAT GTGTGCGTAC
AACTCGCTGC ACGGCACGCC GGCGTGCGCC GCCGACTGGT TGATCAACGG CCGCGTACGT
GGCGACTGGG GCTTCAAGGG GTTTGTGGTG TCCGACTGCG ATGCGGTGGA CGACATGACC
CAGTTCCATT ATTTCCGCCC GGATAATGCC GGCTCCTCGG CCGCAGCGCT CAAGGCCGGG
CATGATCTCA ATTGTGGGCA TGCCTATCGC GAACTCGGCA CGGCGATCGC GCGCGGCGAA
GTGGACGAAG CCTTGCTCGA CCAATCGCTG GTGCGCCTGT TTGCCGCCCG CTATCGCCTG
GGCGAGCTGG AGGCCCCGCG CAAGGATCCT TACGCACGGC TGGGCGCGAA GGATGTCGAC
AACGCGCAGC ATCGTGCGCT GGCCTTGCAG GCGGCGGCCG AGTCGATCGT GTTGCTGAAG
AACAATGCAA ACACGCTGCC TCTCAACGCC GGCACGCGGC TGGCGGTGAT CGGCCCGAAC
GCCGACGCCC TGGCCGCGCT GGAAGCCAAT TACCAGGGCA CATCCTCCGC GCCGGTAACG
CCGCTGCTGG GCCTGCGCCA ACGCTTCGGT GCGCAACAGG TGAGTTATGC GCAAGGTGCG
CCGTTGGCCG CTGGCGTGCC GGGCATGATT CCGGAGACTG CACTGCGCAG CGATGGCAAG
CCGGGGCTGC GTGGCGAATA TTTCGACAAC CTCGACATGA GCGGTGCTGC GCGCGTGGTG
CGTCAGGACC GCGCGGTGAG CTTCAACTGG GATCAGGTTG CCCCGGCGAA GGGCGTCCCT
GCCGACCGTT ATGCGGTGCG CTGGAGCGGC GAATTGCTGC CGCCCAGCGC TGGCGATTAC
ACCCTGGCGG TGCGCGTGGC GCGTTGCTTC GATTGCACCG GGCACGACCC GGTGCGCCTA
TATATCGACG ACAAGCTGGT GGTTGCCGGC AATGCCGAAG ACAAGCACGT GCCGGCCGGC
ATGCATAACG CCGATGGCCG CAGCGTGGAA ACTGTGCTGC ATTTTAACGA TACCCGCCCG
CGCAAGATTC GCCTGGAAAT GGAGCACCGC GGCCAGGACC AGGGCGTGCG TCTGGAATGG
CTGGCCCCTG CCGCGGCGCA ACTGGCCGAG GCCGAGCAGG CCGTGGCGCA GGCAGACGCC
GTGGTGGCCT TCGTCGGCCT GTCGCCGGAT GTGGAAGGCG AAGAGTTGCG GATCGATGTG
CCCGGCTTCG ACGGCGGCGA CCGCAACGAC ATCGCCCTGC CCGCCCCGCA GCAAGCGCTG
CTCGAACGGG CAAAAGCCTC GGGCAAACCG CTGGTGGTGG TGCTGATGAG CGGCAGCGCG
GTGGCCTTGA ACTGGGCCAA GACGCACGCC GATGCGATCG TGGCCGCGTG GTATCCCGGC
CAGTCTGGCG GCACCGCGAT CGCGCGCATG CTGGCCGGCG ATGACAACCC CGGCGGTCGG
CTGCCGGTGA CGTTCTATCG CTCCACCAAG GACCTGCCGG CGTACGTCAG TTACGACATG
AAGGGCCGCA CCTACCGCTA CTTCAAGGGT GAGCCGCTGT TTCCGTTCGG CTATGGCCTG
AGCTACACCC GCTTTGCCTA TGACGCGCCG CAGCTGTCCA GCACCGCGGT GCAGGCCGGC
AGCACGTTGC AGGTGACCAC CACCGTGCGC AACACCGGCG CACGTGCCGG CGACGAAGTG
GCGCAGGTGT ATCTGCAATA TCCGGACCGC CCGCAGTCGC CGTTGCGCAG TCTGGTCGGT
TTTCAGCGCG TGCATCTTGC AGCGGGCGAG CAACGCACGC TGACCTTCAA TCTGGATGCA
CGCGCGTTGA GCGATGTGGA TCGCAGCGGG CAGCGCGCGG TGGAAGCCGG CAACTACACG
TTGTTTGTCG GCGGTGGGCA GCCGGATACT GGCGCCGCTG GCAATGCTGC GTCGTTTTCG
ATCCAGGGAC GCTCGCCGTT GCCGAAGTAA
|
|---|
| Protein sequence | MSLSVFPCRL AAALSVGLAL PLIAAPAVSA KNTDATPEQR AADLVAHMSR EEKVAQAMND
APAIPRLGIP AYEWWSEGLH GIARNGYATV FPQAIGLAAS WNTHLMQQVG TVVSTEARAK
FNQAGRPGKD HKRYAGLTIW SPNINIFRDP RWGRGMETYG EDPFLTGQMA VGFIHGLQGD
DLDHPRTIAT PKHLAVHSGP EPGRHGFDVD VSPRDVEATY TPAFRAAIVE GQAGAVMCAY
NSLHGTPACA ADWLINGRVR GDWGFKGFVV SDCDAVDDMT QFHYFRPDNA GSSAAALKAG
HDLNCGHAYR ELGTAIARGE VDEALLDQSL VRLFAARYRL GELEAPRKDP YARLGAKDVD
NAQHRALALQ AAAESIVLLK NNANTLPLNA GTRLAVIGPN ADALAALEAN YQGTSSAPVT
PLLGLRQRFG AQQVSYAQGA PLAAGVPGMI PETALRSDGK PGLRGEYFDN LDMSGAARVV
RQDRAVSFNW DQVAPAKGVP ADRYAVRWSG ELLPPSAGDY TLAVRVARCF DCTGHDPVRL
YIDDKLVVAG NAEDKHVPAG MHNADGRSVE TVLHFNDTRP RKIRLEMEHR GQDQGVRLEW
LAPAAAQLAE AEQAVAQADA VVAFVGLSPD VEGEELRIDV PGFDGGDRND IALPAPQQAL
LERAKASGKP LVVVLMSGSA VALNWAKTHA DAIVAAWYPG QSGGTAIARM LAGDDNPGGR
LPVTFYRSTK DLPAYVSYDM KGRTYRYFKG EPLFPFGYGL SYTRFAYDAP QLSSTAVQAG
STLQVTTTVR NTGARAGDEV AQVYLQYPDR PQSPLRSLVG FQRVHLAAGE QRTLTFNLDA
RALSDVDRSG QRAVEAGNYT LFVGGGQPDT GAAGNAASFS IQGRSPLPK
|
|---|
| |