Gene PXO_00538 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPXO_00538 
Symbolrnt 
ID6305593 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthomonas oryzae pv. oryzae PXO99A 
KingdomBacteria 
Replicon accessionNC_010717 
Strand- 
Start bp2127758 
End bp2128393 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content63% 
IMG OID642639361 
Productribonuclease T 
Protein accessionYP_001913228 
Protein GI188576299 
COG category[L] Replication, recombination and repair 
COG ID[COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 
TIGRFAM ID[TIGR01298] ribonuclease T 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.0528077 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGAAC CGGTCGATGC ACAGCCTGCC CCCTATTTTT TGCCGATGTC GCGCCGCTTT 
CGCGGCTATC TGCCCGTGGT GGTGGACGTC GAAACGGGCG GGTTCGATTC GAATAAGCAT 
GCGCTGCTGG AAATCGCCTG CGTGCCGATC GAAATGGATG CCGACGGTCG CTTCTTTCCC 
GGCGACACCG CCAGCGCGCA TCTGGTGCCT GCGCCCGGGC TGGAGATCGA CCCGAAATCG 
CTGGAAATCA CCGGCATCGT GCTCGACCAC CCGTTTCGCT TGGCGAAACA GGAAAAGGAC 
GCACTGGACC ATGTGTTCGC GCCGGTACGC GCGGCAGTGA AGAAATACGG CTGCCAGCGT 
GCGATCCTGG TTGGCCACAA CGCGCATTTC GATCTGAACT TTCTCAACGC GGCGGTGGCG 
CGCGTGGGCC ACAAACGCAA CCCGTTTCAT CCCTTCAGCG TGTTCGATAC GGTGACACTG 
GCCGGCGTGG CTTACGGCCA GACCGTGCTG GCACGAGCCG CCCAGGCCGC GGGCCTGGAC 
TGGAATGCCG CCGACGCGCA CAGCGCGGTC TACGACACTG AACAGACCGC ACGCCTGTTC 
TGCAAGATCG CCAACGCCTG GCCGGGGCCG GTTTAG
 
Protein sequence
MNEPVDAQPA PYFLPMSRRF RGYLPVVVDV ETGGFDSNKH ALLEIACVPI EMDADGRFFP 
GDTASAHLVP APGLEIDPKS LEITGIVLDH PFRLAKQEKD ALDHVFAPVR AAVKKYGCQR 
AILVGHNAHF DLNFLNAAVA RVGHKRNPFH PFSVFDTVTL AGVAYGQTVL ARAAQAAGLD 
WNAADAHSAV YDTEQTARLF CKIANAWPGP V