Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_00460 |
Symbol | |
ID | 6305395 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | + |
Start bp | 1939717 |
End bp | 1941303 |
Gene Length | 1587 bp |
Protein Length | 528 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642639164 |
Product | transport protein |
Protein accession | YP_001913037 |
Protein GI | 188576108 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.0564548 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGCAG CGGCCGCCAC CGGCCCGCGT GCCGGCGGTA GCGCCCAGCG CGAGAAGGCC GAGCTGGGCG CCTGGTTGGC GGTGCTGGCC GGCACCATCG GCTCGTTCAT GGCGACGCTG GATATTTCCA TCGTCAATGC GGCATTGCCC ACCATCCAGG GCGAAGTCGG TGCCAGCGGC ACCGAAGGCA CCTGGATCTC CACCGCCTAT CTGGTGGCCG AGATCATCAT GATTCCGCTG ACCGGTTGGT TCGCGCGCAC GCTGGGCCTG CGTAACTTCC TGCTGATCTG TGCGGTGATG TTCACTGCGT TCTCGGTGGT GTGCGGGCTG TCGACGTCGC TTTCGATGAT GATCATCGGC CGCGTGGGGC AGGGGCTGGC TGGCGGCGCC TTGATTCCGA CCGCGCTGAC CATCGTCGCC ACGCGGCTAC CGCCGAGCGA GCAGACCTTG GGCACCGCCC TGTTCGGCAT GACCGTGATC ATGGGCCCGG TGATCGGCCC GCTGCTCGGC GGCTGGCTCA CCGAAAACGT CAGCTGGCAC TACGCGTTTT TCATCAACGT GCCGATCTGC GTTGGCTTGG TCGCGCTGCT GCTGCTTGGC CTCAAGCATG AAAAAGGCGA CTGGGCCGGA CTGCTCAATG CTGATTGGCT GGGCATCTAC GGGCTGACCG CCGGTTTGGG CGGGTTGACC GTGGTGCTGG AAGAAGGCCA GCGCGAGCGT TGGTTCGAAT CCAGCGAGAT CAATACGCTG AGCCTGATTG CGTTGAGCGG ATTCATCGCC TTGGTGATCA GCCAGTTCCG GCGCCGGCCT CCGGTGATCC GTCTGTCGCC GCTGGTGCAG CGCAGCTTCG GCGCGGTCTT CATCATGGTG ATGGCGGTGG GCATGATCCT GTTCGGCGTC ATGTACATGA TTCCGCAGTT CCTGGCGGTG ATCTCGGGCT ACAACACCGA GCAGGCCGGG TATGTGCTGC TGCTGTCCGG GCTGCCGACC GTGCTGCTGA TGCCGATGAT GCCCAAGCTG CTGGAAATGG TGGACGTGCG CATCTTGGTG ATTGCCGGGT TGATCTGTTT TGCCGCTGCC TGTTTCGTCA ATCTGACGCT GACCGCGGAC ACCGTGGGCA CGCATTTTGT CGCCGGGCAG TTGCTGCAGG GCTGTGGCCT GGCGCTGGCA ATGATGTCGC TCAATCAGGC AGCGATTTCG TCGGTGCCGC CGGAACTGGC GGGCGACGCC TCCGGCTTGT TCAACGCTGG CCGCAACCTG GGAGGCTCGG TCGGTCTGGC GCTGATCTCC ACCTTTCAGG AGCGCCGCAT GACGTTCCAC ATCGAAACCA TCGGCAGCGC CGTGACCGCC AATTCGTCGC GTGCGCAGGA TTTTCTGGCT GGGATCACTG CACAGATGCA CGCCAGCGCC GGCGGCGAGG CCGCCATTCG CTCGGTCGCG CAGCTGGCCC GGCTGGTGAA ACAGCAGGCC CTGGTGATGA CCTATAGCGA TCTGTTCTGG ATCTTCGGCG TGATCGTGGT CTGCACGATT CCGCTGGCCT TTTTGCTCAA GCCGTTACCC AAGGGGGCGC ACCTTGCAAT GCACTGA
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Protein sequence | MSAAAATGPR AGGSAQREKA ELGAWLAVLA GTIGSFMATL DISIVNAALP TIQGEVGASG TEGTWISTAY LVAEIIMIPL TGWFARTLGL RNFLLICAVM FTAFSVVCGL STSLSMMIIG RVGQGLAGGA LIPTALTIVA TRLPPSEQTL GTALFGMTVI MGPVIGPLLG GWLTENVSWH YAFFINVPIC VGLVALLLLG LKHEKGDWAG LLNADWLGIY GLTAGLGGLT VVLEEGQRER WFESSEINTL SLIALSGFIA LVISQFRRRP PVIRLSPLVQ RSFGAVFIMV MAVGMILFGV MYMIPQFLAV ISGYNTEQAG YVLLLSGLPT VLLMPMMPKL LEMVDVRILV IAGLICFAAA CFVNLTLTAD TVGTHFVAGQ LLQGCGLALA MMSLNQAAIS SVPPELAGDA SGLFNAGRNL GGSVGLALIS TFQERRMTFH IETIGSAVTA NSSRAQDFLA GITAQMHASA GGEAAIRSVA QLARLVKQQA LVMTYSDLFW IFGVIVVCTI PLAFLLKPLP KGAHLAMH
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