| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00384 |
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| Symbol | |
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| ID | 6305475 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 2015945 |
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| End bp | 2018062 |
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| Gene Length | 2118 bp |
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| Protein Length | 705 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642639244 |
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| Product | Putative signal protein with GGDEF and EAL domains |
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| Protein accession | YP_001913116 |
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| Protein GI | 188576187 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.589781 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCAGC TGCGCTTTGG CTTGCAGGCA CGCTTTCTGT TGGTGATGGC GCTGACGCTG
TTACTGGTCG GGACGATTCT GGCCTCGCTG TTGCAGCGAC AAAGCGCCAT GCAGCGCGAG
GTGCGCGGGT TGAGTGCGCA GATCCTGCAT GAGCTATTCG ACCGTAGCCT GCGCACGCGC
GGCGAAACGC TGGCGACCGA ACTGGCCTCC GGGCTGGCCA ATCCCGTGTA TTACTCGGAC
CTGGGCGCGG TGGGCGCGCT GGTGCGCAAT GCCATGCGCC AGCAGGTGGT GAGCTATGTG
CTGGTATTCG ACCGCCATGG CCGGCTGGTG CACGACGGCA CGCCGACCTT GCAGCGCTAC
GGGCAGGCCA TGACCGATCC GCTCGCGGCC AAGGCGCTGG CGGCGCAGAA AATGGTGTTG
CAGTACTCGC CGGAGGTGCT GGATGTCACG GTGCCGATCA AGATCGGCGA CCAGCGCATC
GGCGGCGTGC GGGTGGGCAT GTCGCGCGAG CGGGTGCGCA AGATCGAGTC CGGCGCCAAT
CTGACGTTGG TGCAAAACCT CAACGCCATC GGCAAGCGCG ATCTGGGCTG GCTGCTGGTG
CTGCTGGCCG CGCTGGTGGG GCTGGGTGTC TTGCTGGCCA TTTATGTGCA GCGCACGCTG
GTGGCGCCGG TGCGGCTGCT GGCGGCTGCG GCCAAGCAGA TCGAACGTGG TGATTACGCA
GTACAGCTGC CGCCGCACCC GCGTAACGAC GAGATCGGCG AGCTGATTTC CGCGTTCGGG
CGTATGAGCG AAAGCATCGC CCGCCACGAC CGCGAAGTGC GGCACATGGC CTACACCGAC
GCACTGACCG GGCTGACCAA CCGCCTGGGC TTCCGCGAAG GGCTGGATCA TCTGCTCAAC
ACCGCCCGCA GCACCGGCAG CAAGCTGGCA CTGCTGTTCG CCGATATCGA CGACTTCAAA
CGCGTCAACG ACACGCTCGG CCACGAAGCC GGCGACGAAG CCTTGCTGCA GTTCGCCAGC
CGCATCAGCC GCGCGGTGGC TGCGTTGGGC GACGACGATG CGATTCTGGC GCGTTTCGGT
GGCGATGAGT TCGTGATGCT GTTGCAGAGC GGCGACGTCA GCCTGCTGGC CGCGCAGTTG
GCCGAGCGCC TGGTGCATGA GCTGAGCCGG CCGTTGAACG TGCAGGGCCG CGAGGTGTTC
CTGGGCACTT CGATCGGCAT CACGCTGTTC CCGGACGATG CCCGCGATGC CACCGCGCTG
CTGAAGAATG GCGACATCGC GATGTACCAG GCCAAGGTAG CCGGAAAGAA TTGCCATCGC
TTCTACAGCC GCGCTGCCGA TCATGCCGTC GAGCGCCGCG TGCGCATGGA GCACGAGTTG
CGCGGGGCCT GGGAACGCGA CGAGCTGCTG CTGGTCTATC AGCCGATCTA TCGCACAAGC
GACCGCGTGC TGGTGGGCGT GGAAGTGCTG TTGCGCTGGC AGCATCCGAC ACTCGGGACG
ATTGCACCGT CTACGTTTAT CGATATTGCC GAGCAGAGCG GCCTGATCGA AGTGATCGGC
CCCAAGGTGC TGCGCGCAGC ATGCCTGGAG GCGGCGCAAT GGCCGTTGGT GGGCGAAGGC
CTGTTTGTGT CAGTCAATGT GTCCCCGCGG CAGTTGCGCA GTGGCGATTT GATCGACACC
GTGGCCCAAT GCCTGGCCGA GTCGGGATTG CCGGCCGCGC GCCTGCATCT GGAACTCACC
GAGACCGCGG TGATCGGCGA CGAAATGATG GCCGCCCGCT TGCTTGATCA ACTGCACCGC
ACCGGCGTGA AGGTGTGGCT GGACGACTTC GGCACCGGCT TCTCCGGCCT GAGCCATTTG
CGCCAGGTGC CGGTGGACGG GGTCAAGATC GACAAGAGTT TCATCGCCGA CCTGCAGCGC
GACCCGGACG ATTTGGCCCT GACCACTGCG ATCATCAACA TGGCGCATTC GCTGGGAATT
ACCGTCGTTG CCGAAGGCAT CGAGCAGGAA GCGCAATTCA ATCTGCTACG CGAGCGCGGC
TGCGATCTGG GTCAGGGTTA CTGGTTCAGC CGGCCATTGA GCCCGGCCGA TATGGTCAAG
CTGATCGCAG CAGGCTGA
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| Protein sequence | MTQLRFGLQA RFLLVMALTL LLVGTILASL LQRQSAMQRE VRGLSAQILH ELFDRSLRTR
GETLATELAS GLANPVYYSD LGAVGALVRN AMRQQVVSYV LVFDRHGRLV HDGTPTLQRY
GQAMTDPLAA KALAAQKMVL QYSPEVLDVT VPIKIGDQRI GGVRVGMSRE RVRKIESGAN
LTLVQNLNAI GKRDLGWLLV LLAALVGLGV LLAIYVQRTL VAPVRLLAAA AKQIERGDYA
VQLPPHPRND EIGELISAFG RMSESIARHD REVRHMAYTD ALTGLTNRLG FREGLDHLLN
TARSTGSKLA LLFADIDDFK RVNDTLGHEA GDEALLQFAS RISRAVAALG DDDAILARFG
GDEFVMLLQS GDVSLLAAQL AERLVHELSR PLNVQGREVF LGTSIGITLF PDDARDATAL
LKNGDIAMYQ AKVAGKNCHR FYSRAADHAV ERRVRMEHEL RGAWERDELL LVYQPIYRTS
DRVLVGVEVL LRWQHPTLGT IAPSTFIDIA EQSGLIEVIG PKVLRAACLE AAQWPLVGEG
LFVSVNVSPR QLRSGDLIDT VAQCLAESGL PAARLHLELT ETAVIGDEMM AARLLDQLHR
TGVKVWLDDF GTGFSGLSHL RQVPVDGVKI DKSFIADLQR DPDDLALTTA IINMAHSLGI
TVVAEGIEQE AQFNLLRERG CDLGQGYWFS RPLSPADMVK LIAAG
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