Gene PXO_00261 details

Gene Information

• Locus tag: PXO_00261
• Symbol: sciC
• ID: 6305095
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: +
• Start bp: 1596520
• End bp: 1598397
• Gene Length: 1878 bp
• Protein Length: 625 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 642638866
• Product: SciC protein
• Protein accession: YP_001912742
• Protein GI: 188575813
• COG category: [S] Function unknown
• COG ID: [COG3519] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03359] type VI secretion protein, VC_A0110 family

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.527979
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATCCGC GCCTGCTCCA TCACTACAAC CGCGAGTTGC AGCATGTGCG CGAGATGGGT 
GCGGAATTCG CGCAGGCGTA TCCGAAAGTG GCGGGCCGGC TTGGGATGAG CGGTATCGAG 
TGCGCCGACC CGTATGTCGA ACGTCTGCTG GAAGGGTTTG CCTTCCTGTC TGCGCGCGTG 
CAGGTCGAAC TCGAAGCCCA GCAGCCTGCA TTCGCGCAGC ATCTGACGGA AATGCTGTAT 
CCACATTTCC TGTCGCCGGT GCCGTCGATG GCCGTGGTGG AGCTGCAACC GGAGCAAGGC 
GAGGGCATCG GCCCAGCGGG GCATGTGGTG CCGCGCGGCA GCGCGTTGCG CTCGTTGATC 
GGGCATGGCG ACCGCACCGC CTGCGAATAT CGCACCGCGC ACGCGGTGAC GCTGTTGCCG 
CTGCGCCTGA CTGCCGCCAG TTATCTCACC TCGCCGGCAG CGCTGGCCAC GCTCGGTGTG 
CCGGTCGAGC CGCGTGCGCG CGCCGGCCTT CGCCTGGTCT TCAACGTCGA CCCCGGGCTG 
CGCCTGGACA TGCTGGCGCT GGACACATTG CCGATCTTCA TCACCGGCGC CGATGGGTTG 
GCCGGCACCC TCCACGAACA ACTGCATGCC AATGCGTTGG GATTTGTGGT GCGTACCCGC 
TCCGCGGATG GGCAGGTGCT GACGCGCACC TTCGGTCCCG AGCATCTGCA GCCGCAGGGC 
TTCGATGACG AGCAGGCGCT GCTGCCGCGC AGCGAACGCT CTTTCAGCGG CTATCGCCTG 
CTGCAGGAAT ATTTTGCCTG CCCCGAGCGT TTCCTGTTTA CCGCCTTCGA TGGCCTGGCG 
CAGGTGCTGA CGCGAGCGGC GTGCGCCGAA TTCGAGATGT TGGTGTGGTT CGACCGCAGC 
GTCGAGCGGC TCGATAACGC GGTGGACGCA AGTAACTTCC GCCTGCATTG CACCCCGGCG 
ATCAACCTGT TTCCTCGGCG CGGTGATCGT ATCCATCTGC ATCCCGGCAT CTCCGAGCAC 
CACGTGCTGG CCGACCGCAC GCGGCCGATG GACTTCGAGA TTCATGGCGT GGAGCAGGTC 
GAAGGCTTCG GCGATGGCAA TGCGCCAATG CAGCGTTTCG AGCCGTTCTA TGGCGCGCAG 
CCGCGCAGTT GGCATGAGCG GCGTTCGGCA TTTTATGCCT TGCGACGGCA GCCGCGGCGG 
CTGTCGACGG GACAGCGTCG TACCGGGCCG CGCTCGAGCT ACGTTGGCAG CGAGGTGTTC 
CTGTCGCTGG TCGATGGCGA CCAGGCGCCG TATTCGCACC AACTGCGGCA ACTGGGCATG 
CAGCTGTGGT GCAGCAACCG CGATCTGCCG CTGCATATGC CGGTGGGCAA ATCCAGCACC 
GACTTCGTCC TCGACGATGG CGGCCCGGTG GCGTCGATCC GCTGCGTTGC AGGTCCAACG 
CGACCGCGCT CGGGCGTGAC CGCCGGCGAT ACCCGCTGGC GCCTGATCAG CCATCTGCAG 
TTGAACTATC TCTCGCTGCT GGATGCCGGC GACGACGGTG CCACCGCATT GCGCGAGATG 
CTCACGCTGT ACCACGACCC GCACGATGCC GCTGCGCGAC GACAGGTAGA CGGCGTGCGC 
CGCATCGCTT CGCGCCCGAT CGTACGGCGC ATTCCGGTGC CGGGCCCGGC CACCTATGGC 
CGCGGGCTTG AGATCACCTT GACCTGCGAC GACGCGGCCT TTGAAGGGCA GGGCGTCTAT 
CTGCTTGCCT CGGTGCTGCG GCATGTCTTT GCGCGCCAGG CATCGCTCAA TTCCTTTACC 
GAAACCGTGC TATGCACGCC CGAACGCAAC GAGGTCGCTC GATGGCCAGC CCATCTCGGC 
AATCGGCCGA TCCTGTAG 

 

Protein sequence

MDPRLLHHYN RELQHVREMG AEFAQAYPKV AGRLGMSGIE CADPYVERLL EGFAFLSARV 
QVELEAQQPA FAQHLTEMLY PHFLSPVPSM AVVELQPEQG EGIGPAGHVV PRGSALRSLI 
GHGDRTACEY RTAHAVTLLP LRLTAASYLT SPAALATLGV PVEPRARAGL RLVFNVDPGL 
RLDMLALDTL PIFITGADGL AGTLHEQLHA NALGFVVRTR SADGQVLTRT FGPEHLQPQG 
FDDEQALLPR SERSFSGYRL LQEYFACPER FLFTAFDGLA QVLTRAACAE FEMLVWFDRS 
VERLDNAVDA SNFRLHCTPA INLFPRRGDR IHLHPGISEH HVLADRTRPM DFEIHGVEQV 
EGFGDGNAPM QRFEPFYGAQ PRSWHERRSA FYALRRQPRR LSTGQRRTGP RSSYVGSEVF 
LSLVDGDQAP YSHQLRQLGM QLWCSNRDLP LHMPVGKSST DFVLDDGGPV ASIRCVAGPT 
RPRSGVTAGD TRWRLISHLQ LNYLSLLDAG DDGATALREM LTLYHDPHDA AARRQVDGVR 
RIASRPIVRR IPVPGPATYG RGLEITLTCD DAAFEGQGVY LLASVLRHVF ARQASLNSFT 
ETVLCTPERN EVARWPAHLG NRPIL