Gene PXO_00256 details

Gene Information

• Locus tag: PXO_00256
• ID: 6305100
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: +
• Start bp: 1604466
• End bp: 1606403
• Gene Length: 1938 bp
• Protein Length: 645 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 642638871
• Product: Rhs-family protein
• Protein accession: YP_001912747
• Protein GI: 188575818
• COG category: [S] Function unknown
• COG ID: [COG3501] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR01646] Rhs element Vgr protein; [TIGR03361] type VI secretion system Vgr family protein

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCCACG CCATTACCCT GCAGTCGCCG CTTGGCAAGA CGCTGCGCTT TGTGCGGATG 
AGCGCGCACG AGGCACTGGG GCGGCCCTAT GCGTTCGCGT TGCACGGCAT CAGCCGCGAT 
GTGGCGATCG ACCTGCGCGC TCTGCTGGGC AAGCCGATGG CGGTCAAGGT CACTTCACCG 
CAGGGCTATG TGCGGCATTA CCACGGCATC GTCGCCGAGG CGGAGCAGAC CGGGTTCGAG 
CAGATCGAGG GGCTGCGCTA CGCCACCTAT GCCTTCTCGC TGGTGCCCAA GCTGTGGTTG 
CTCGGGCAGC GCCGCGATTG CCGCATCTAC AAGAACAAGA GCGTGCCGGA GCTGGTGCGC 
GCGTTGCTGG CCGAGGTTGG ATGCACCGAC GTGAAGCTGC GCCTGAGCGC GAGCTACACG 
CCGCGCGAAT ACTGCGTGCA GTACCGCGAG AGCGCGCTGG ACTTCATCAG CCGCTTGATG 
GAGCAAGAGG GCATCTACTA CTACTTCGCA CACAGTGCCA GCACGCATAC GCTGGTGCTG 
GCCGACAGTC TCGGCGCGCA CGAATCCTCT GCGCCATTCG CACAAATCCC TTACTGCCCG 
CCCGGGCAGA AGGGCAGCCG GATGAAGGAC GCGATCACCG ATTGGTCGCT GGCGCGCAGC 
GCGCACAGCA CGCGCGTGCG CCTGGACGAC TACGACTATC TCAAGCCCAA GGCCTCGCTG 
CGGGTGGACG AGACACCGGC CGAGTCTTCG GGACCGGCGC TGGGCGAGCT GGATGTGTTC 
GATTATCCCG GCGAGCATCT CGATGTCGCG GCCGGTCGTC GTCACGCGCA GGTGCGTGCC 
GAAGCGCTCA ACGTGGCGCA GGCGCAATAC CAGGGCTGGA CCGATGCCTG CGGTTTGCAG 
GTGGGCGCAT TGTTCAAGCT GCGCGACTTT CCGCTGGCCG AGCACAACCA GGAATACCTG 
GTGACCAGCG CGGACACCGA ACTGGTTGAA GTGGATTATG TGTCCGGTGG CCAGACGGTT 
GCCGAGCCGT TTGCGTCCAC CTTCCGTGCG CTACGCAGTC GGCAGCCGTT TCGGACCCCG 
CAGACCACGC CGCGTCCGAG TATTGCCGGG GTGCAGACCG CGCTCGTCGA CGGCAACAAG 
GCCGAGGATA TTGCGGTCGA TCAGTACGGC CGTGTGCAGG TGAATTTCTT CTGGAGTCCG 
CCGGGAACGC CAAACGCCGT CTGCTCGTGC CCGGTACGCG TGGCGCAGTC GTGGGCGGGC 
AAACGCTGGG GCGCGCAGCA CATTCCGCGT GTGGGCCAGG AGGTGGTGGT GAGCTTTCTG 
GAAGGCAATC CGGATCGTCC GCTGATCATC GGCAGCGTCT ACAACGCCGA CCAGCTGCCA 
CCGTATGCAC TGCCCGAGCA CCGCACCCGT AGCGGGGTAA AGAGCCGCAG CCTGTCGGGT 
GGGGCAGAGG ACTACAACGA GATCCGTTTC GACGACAAGA AGGGCAACGA AGAGCTGCTG 
CTGCATGCGC AGCGCGATCT GCGCCACGAA GCGGAGAACG ACCATTTCGT CACTGTCGAC 
CGCAACGAAA CCGCCGAGAT CAAACGCGAA CGCAGCCACA CCGTTGGCGG CAACGACCGT 
CTGGACGTGG GCAAGACACT CCGCATCCAG GCAGGGAGCG AGATCGCGTT GGTGACCGGG 
ATGGCTCGCC TGCAGTTGAA GGCCAGCGGC GAGATCGTGC TCAGCGGCAC CCGGCTCACG 
CTCGATGGAC GCGTCAGCGT CGGCATCCAG GGTGGCGTCA GTGTCGATGT CAGCGCGATG 
GCCAACCTGA CCCTGCGCTC GAACGCGTCG GTGCTGCTGC AATCCAACGC CGTGACCACC 
GCGCGCGCCA ACGCGGCGCT GCTGTTGCAG TCGTCAGGTC CGGCCGTGCT CAAGGGCACT 
CCGCCCATCA TCGCTTGA 

 

Protein sequence

MAHAITLQSP LGKTLRFVRM SAHEALGRPY AFALHGISRD VAIDLRALLG KPMAVKVTSP 
QGYVRHYHGI VAEAEQTGFE QIEGLRYATY AFSLVPKLWL LGQRRDCRIY KNKSVPELVR 
ALLAEVGCTD VKLRLSASYT PREYCVQYRE SALDFISRLM EQEGIYYYFA HSASTHTLVL 
ADSLGAHESS APFAQIPYCP PGQKGSRMKD AITDWSLARS AHSTRVRLDD YDYLKPKASL 
RVDETPAESS GPALGELDVF DYPGEHLDVA AGRRHAQVRA EALNVAQAQY QGWTDACGLQ 
VGALFKLRDF PLAEHNQEYL VTSADTELVE VDYVSGGQTV AEPFASTFRA LRSRQPFRTP 
QTTPRPSIAG VQTALVDGNK AEDIAVDQYG RVQVNFFWSP PGTPNAVCSC PVRVAQSWAG 
KRWGAQHIPR VGQEVVVSFL EGNPDRPLII GSVYNADQLP PYALPEHRTR SGVKSRSLSG 
GAEDYNEIRF DDKKGNEELL LHAQRDLRHE AENDHFVTVD RNETAEIKRE RSHTVGGNDR 
LDVGKTLRIQ AGSEIALVTG MARLQLKASG EIVLSGTRLT LDGRVSVGIQ GGVSVDVSAM 
ANLTLRSNAS VLLQSNAVTT ARANAALLLQ SSGPAVLKGT PPIIA