| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00069 |
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| Symbol | rpfC |
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| ID | 6305281 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 1791345 |
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| End bp | 1793501 |
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| Gene Length | 2157 bp |
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| Protein Length | 718 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642639052 |
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| Product | two component sensor-regulator hybrid protein RpfC |
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| Protein accession | YP_001912925 |
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| Protein GI | 188575996 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.397596 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAACAAC GTCTGTCAGG CCGGCCGGAT ACGGAACACG CGCAAAACCT GATCCGTATC
ATCATCACCA CGTTGTTCAT CTCCTACCTG GGTTGGCGCT ACCACAACAC CCACGGCGAC
ACCTTGATGG CCACTTGGTT GATCCTGGTT GGCGAACTGG TGGTATCGCT GGCGCTCATG
GTGGCGATCC TGCTACGGCC GCAGGTGTCG CACAGGCGGC GTCTGATCGC CATGCTGCTC
GACTACACCT GCACCGGCGC GATCATGGCC ATTCAGGGCG AACCGGCATC GCCGTTGTAC
GCGGTGTGCA TGTGGGTGAC CATCGGCAAT GGCTTGCGCT ACGGCAGCAA CTATCTACGT
GCCGCCACGG CGATGGCCAG CCTGAGTGTT CTCAGTGCCA TCCTGATTTC GCCTTATTGG
AAAGCCAATC CCTATTTGAG TTGGGGCTTG CTGCTGGGCT TGATTGCGGT GCCGCTGTAC
TTCGATTCGT TGTTGCGTGC GATGACGCGC GCGGTACGCG AAGCGCGGCA TGCCAACCAG
GCCAAGAGCC GTTTCCTGGC CAATATGAGT CACGAATTCC GCACCCCGTT GAATGGCTTG
TCGGGCATGA CCGAAGTGCT GGCCACCACG CGTCTGGATG TAGAGCAGAA GGAATGCCTG
AATACCATCC AGGCCTCGGC GCGCAGTCTG CTGTCGCTGG TGGAAGAGGT GCTGGATATT
TCCGCGATCG AGGCGGGCAA GATCCGTATC GATCGCCGCG ATTTCTCGCT GCGCGACCTT
ATTGGCTCGG TCAACATGAT CCTGCAGCCG CAGGCCAAGA CGCGCGGACT GGATTACGGC
ACCGAGGTCG CCACCGACGT ACCGGACCTG CTCAAGGGCG ACACCGGCCA TCTACGCCAG
GTGTTGCTCA ACTTATTGGG CAATGCGGTC AAGTTCACTG ATCACGGGCA TGTGCTGCTG
CGGGTCGCGC GGCTCGCCGG CAATGGTGCC GACACGGTGC GGCTGCGTTT CGATGTCGAG
GACAGCGGTA TCGGCGTGCC GATGGACATG CGTCCGCGCA TGTTCGAGGC GTTCGAGCAG
GCGGACATGG GGTTGTCGCG CCGCTATGAA GGCACTGGCC TGGGTACCAC GATCGCCAAG
GGGCTGATCG AGGCCATGGG CGGCGCAATT GGCTATACCC CCAATCGCCC AAGCGGCAGC
GTGTTCTGGT TCGAGTTGCA GCTGGAGATT GGCATCCTGG AGAAGGCTGC GCCGACGCGC
ACGCCGGTCG GCGTGCTGGA GACGCCCGAC GAACTGGAAC CCTCCAACGT CATTGCCTTC
TCCAACCCGT TTCTGCGTCA TCGCGCGCGC GTGCGCAGCA TGCGCATGCT GGTGGCCGAT
GACCATGAAG CCAATCGTAT GGTGTTGCAG CGATTGCTGG AGAAGGCCGG GCACAGGGTG
ATGTGCGTCA ACGGTGCCGA GCAGGTATTG GACGCGATGG CCGACGAGGA TTTCGATGCG
GTGATTGTGG ATCTCCACAT GCCGGGCATG AGTGGACTGG ACATGCTCAA GCAACTGCGC
GTGATGCAAG CCAGCGGGAT GCGCTACACC CCGGTGGTGG TGCTCAGCGC CGATGTCACA
CCCGAGGCGA TCCGCGCGTG CGAGCAGGCC GGTGCCCGTG CGTTTCTGGC CAAGCCCGTG
GTGGCTGCCA AGTTGCTCGA CACGGTGGCT GAGCTTGCGG TCAGCACCCG TCCACTGGCG
ACGCAGGCTC CGGTCGTGCA GGCACCGACC AGTTTCGAAG GCGTTCTCGA CGCCAGCGTG
CTGGACGAAC TTGCCGCGTT GGGCATGGGG GAAGAATTCG AACGTCAGTT CATTCGGCAA
TGTCTGGATG ATGCACACAA TTGTGTCGGT GCGATCGAGC GCGATGGCAG CCGCTCGGAT
TGGGAGCAGC TACGCGAAGG CGCCCACGCA TTGCGTGGCG TTGCCAGCAA TCTGGGGCTG
GCCCAGCTGG CCAGCAGTGG CGGCGAGCTG ATGCGCATGG CCGATTGGCA GCTACAGGCC
GAATGGCGGC AGCTGCTGTC GGCGCTACGC GAGCAGCTAC AGACCGGAAG GGAGGTACTC
GACGCACGCC TGCAAGGCGT CAAAGACGAC GAACGCTCCC CCCGGAGCAG CGAATAG
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| Protein sequence | MKQRLSGRPD TEHAQNLIRI IITTLFISYL GWRYHNTHGD TLMATWLILV GELVVSLALM
VAILLRPQVS HRRRLIAMLL DYTCTGAIMA IQGEPASPLY AVCMWVTIGN GLRYGSNYLR
AATAMASLSV LSAILISPYW KANPYLSWGL LLGLIAVPLY FDSLLRAMTR AVREARHANQ
AKSRFLANMS HEFRTPLNGL SGMTEVLATT RLDVEQKECL NTIQASARSL LSLVEEVLDI
SAIEAGKIRI DRRDFSLRDL IGSVNMILQP QAKTRGLDYG TEVATDVPDL LKGDTGHLRQ
VLLNLLGNAV KFTDHGHVLL RVARLAGNGA DTVRLRFDVE DSGIGVPMDM RPRMFEAFEQ
ADMGLSRRYE GTGLGTTIAK GLIEAMGGAI GYTPNRPSGS VFWFELQLEI GILEKAAPTR
TPVGVLETPD ELEPSNVIAF SNPFLRHRAR VRSMRMLVAD DHEANRMVLQ RLLEKAGHRV
MCVNGAEQVL DAMADEDFDA VIVDLHMPGM SGLDMLKQLR VMQASGMRYT PVVVLSADVT
PEAIRACEQA GARAFLAKPV VAAKLLDTVA ELAVSTRPLA TQAPVVQAPT SFEGVLDASV
LDELAALGMG EEFERQFIRQ CLDDAHNCVG AIERDGSRSD WEQLREGAHA LRGVASNLGL
AQLASSGGEL MRMADWQLQA EWRQLLSALR EQLQTGREVL DARLQGVKDD ERSPRSSE
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