| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4992 |
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| Symbol | |
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| ID | 6289905 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010683 |
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| Strand | - |
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| Start bp | 44304 |
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| End bp | 45800 |
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| Gene Length | 1497 bp |
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| Protein Length | 498 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642627387 |
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| Product | Carbohydrate-selective porin OprB |
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| Protein accession | YP_001901353 |
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| Protein GI | 187930867 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3659] Carbohydrate-selective porin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000000000000230615 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00966153 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTGTTTT TTCCCCTTAT TCAACACATT TGGGTGGCAG TGCGTTCGCT TTCTGTAGTG
CGAGCCACAG TCCTTAGCCA GGTCGCCCGT CGCCGTTCAG CTCAGCTGTC CATGGCAGTG
CTGATGTCTG CCTTGGCTTG CGTTGCCCAC GCAGAAAATA CCGTCCTGGC CGAAACCCCG
CCTACTTCTT CGGCGGAGGA TCAGAATGCC GTGGGTTCTA AATCGCCTGC TTCTGCCGAG
CAAGCGCCGG CAATGCCGGA GGCACAGTGG TGGAATTTCC ACGCGCAGGC CACTCATATC
ACCCAGTGGC ACTCCAAGTT CCGAGCCCCC TACGCTGGCG CGAACTCTTT GGCCTCCGAC
GGCGAGAGCA GTGAAACCAC CGACATGACG CTCTTCGTTG GGCTGCGTCT TTGGCATGGA
GCCGAGTTGT ATGCGAACCC CGAAATTGAT CAGGGCTTTG GCTTGAGCAA CACGCTCGGT
GTGGCCGGCT TTCCTAGCGG AGGTGCATAC AAAGTCGGCA ACAACACGCC TTACCATAAG
CTGCCGCGGC TTTTCCTGCG ACAGACCATC AACCTGGGGG GGGAGTCTGA ACCGTTGGAG
TCAGCGGCAA ATCAACTCGC TGGGTCGAGA TCCGCTGACA ACATCACCGT CACCGTCGGC
AAATTTGCCG TAGTGGACGT CTTTGACACC AACAGCTACG CGCATGATCC ACGTGCAGAC
TTCTTGAACT GGTCTGTTAT CGAAGCCGGT GCTTTCGATT ATGCGGCGGA CGCGTGGGGG
TACACGCGCG GTGCTGCGGT GGAGTGGACA CAATCTTGGT GGACCGTGCG CGGGGGCTTC
TTTGCCCTGT CAACGACACC GAATAGCGAG TCCATCGATG TAGGCTTCAA GCAGCATGAA
TGGGTCGGCG AAATCGAAGC GCGCCATCAG TTGTTGGGCC GTCCGGGCAA GTTGAAATTC
CTGGCCTTCG TGAACCGCGG CTATATGGGC CGCTATGACG ATGCGGTGAG TCTGGCGCAG
CAGACAGGAT CGACGCCAGA TACATCCTTG GTCAGGCAGT TCGCCTCCCG ACGTGGCGTC
GCGCTCAATG TTGAGCAAGA ACTGGCAAAT GATCTGGGTT TCTTTGCTCG GGCCAGCATG
AATGACGGCA ACAAAGAGAC CTTTGACTTC ACCGATATCA ATCAGTCAGT TTCTGCGGGC
CTTTCCATGT CCGGTAGCTG CTGGGGGCGT TCCAAAGACA GGCTTGGCGT TGCTTTTGCA
GTTAACGGTT TGTCCAAGGC GGCGAGGCAG TATTTTGCGG CCGGCGGGTT GGGCGTCCTG
ATCGGGGACG GCGCACTGAA CTACGGTACT GAGCGGATCG CTGAAATTTA CTACACTTGG
GCAGTCATGC CTCATGTCAC TGCTGGGCTC GACTACCAGT ACATTGTCCA CCCCGCCTAT
AACCGGGACC GGGGACCTGT TTCAGTCGTA GCCGCACGCC TTCATCTGGA TTTTTGA
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| Protein sequence | MLFFPLIQHI WVAVRSLSVV RATVLSQVAR RRSAQLSMAV LMSALACVAH AENTVLAETP
PTSSAEDQNA VGSKSPASAE QAPAMPEAQW WNFHAQATHI TQWHSKFRAP YAGANSLASD
GESSETTDMT LFVGLRLWHG AELYANPEID QGFGLSNTLG VAGFPSGGAY KVGNNTPYHK
LPRLFLRQTI NLGGESEPLE SAANQLAGSR SADNITVTVG KFAVVDVFDT NSYAHDPRAD
FLNWSVIEAG AFDYAADAWG YTRGAAVEWT QSWWTVRGGF FALSTTPNSE SIDVGFKQHE
WVGEIEARHQ LLGRPGKLKF LAFVNRGYMG RYDDAVSLAQ QTGSTPDTSL VRQFASRRGV
ALNVEQELAN DLGFFARASM NDGNKETFDF TDINQSVSAG LSMSGSCWGR SKDRLGVAFA
VNGLSKAARQ YFAAGGLGVL IGDGALNYGT ERIAEIYYTW AVMPHVTAGL DYQYIVHPAY
NRDRGPVSVV AARLHLDF
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