| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3680 |
|---|
| Symbol | |
|---|
| ID | 6287766 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 3854958 |
|---|
| End bp | 3856145 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642627264 |
|---|
| Product | Peptidoglycan-binding LysM |
|---|
| Protein accession | YP_001901230 |
|---|
| Protein GI | 187930743 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTCTC AGCCCGCCAT GCAAGCCGCC ACGAAAGCGC GCCAGCCTTA CGTTTGCGCC
CTGTCGGCGG TTGCCGCGGT AGCGCTTTTC TGCATGGGTG CCGCCCACGC CGCCGAGCGC
ACTGTGACGC CGGCGCAACA GGCGCAGGCC GCGACTGCCG CCCAAGCTGG CATCCCCGAA
TCCGAACTGG CCGCCACCGC GCCCGCACAG TACACCGTGC GCCGTGGCGA CACGCTGTGG
GCAATCTCGG GCAAGTACCT CAAGCGGCCA TATCGCTGGC CCGAGCTGTG GGGCATGAAC
CGCGAGCAGA TCCGCAACCC GCATCTGATC TATCCGGGCC AGATCCTGTA TCTGCATCAC
GCGAATGGCC GCGCATGGCT GTCGAGTTCG CCGGCATCGG CGGATGGCAG CACGGTGCGC
CTGTCGCCGC ATACCCGCGT GTCGGGGCAG GACGGTGACG CCATCTCAAG CATTCCCGCC
GCCGCCATCG AGCCGTTCCT GACCCAGCCG ATCGTGGTGG ATGAAGACAC GCTGGCCACG
CCGGCGCGCA TCTTCTCGCT GCCCGAAGGC CGCGTTTATC TGGGCAAGGG CGAAAACGCC
TACGCCCGCG GCCTGCCGCA GGGCGAAGGC GGCCAGGCCG GTAGCGAATG GCAGGCGTAT
CGCCCAGTCC GTCCGCTCAA GGATCCGGTG ACGGGCAACG TGCTCGGCTA CGAAGCCGAC
TTCCTCGGTA CGCTGCGCGT GGTGCGCGCG GCGACCGGCC CGCAGGCGGT GACCAAGATG
GAAGTGCTGT CGTCCAAGGA AGAAATGGGC GTCGGCTCGC AACTGATGCC ACTGCCCCCG
CGCGTGCCGG TGCGCTATGT GCCGCATGCG CCGGAAGGCG ACATGCACGG CGCGGTCGCC
AAGGTGACCG GCGGCGTACG CTTTGGCGGT ACCGACCAGG TGGTTGTGCT GAACATCGGC
AGCCAGCAGG GGCTCGAGCC GGGTCACGTG CTGTCGCTGG CACGCGCCGG CGCCGTCGTG
AAGGACGCGA CGGGCGGCAA TGAAGCCGTG CAGCTGCCCG CAGAGCGCTA CGGCCTGGCC
TTCGTGTTCC GCGTGTTCCC GCACGTGGCC TATGCGCTGG TGACGGACGC ATCGAACGCC
GTGGAAGTGG GCGATAGCGT CAGCAACCCG ATGTCGCAGC AACCCTGA
|
|---|
| Protein sequence | MLSQPAMQAA TKARQPYVCA LSAVAAVALF CMGAAHAAER TVTPAQQAQA ATAAQAGIPE
SELAATAPAQ YTVRRGDTLW AISGKYLKRP YRWPELWGMN REQIRNPHLI YPGQILYLHH
ANGRAWLSSS PASADGSTVR LSPHTRVSGQ DGDAISSIPA AAIEPFLTQP IVVDEDTLAT
PARIFSLPEG RVYLGKGENA YARGLPQGEG GQAGSEWQAY RPVRPLKDPV TGNVLGYEAD
FLGTLRVVRA ATGPQAVTKM EVLSSKEEMG VGSQLMPLPP RVPVRYVPHA PEGDMHGAVA
KVTGGVRFGG TDQVVVLNIG SQQGLEPGHV LSLARAGAVV KDATGGNEAV QLPAERYGLA
FVFRVFPHVA YALVTDASNA VEVGDSVSNP MSQQP
|
|---|
| |