| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3640 |
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| Symbol | |
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| ID | 6288025 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 3805973 |
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| End bp | 3810994 |
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| Gene Length | 5022 bp |
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| Protein Length | 1673 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642627224 |
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| Product | outer membrane autotransporter barrel domain protein |
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| Protein accession | YP_001901191 |
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| Protein GI | 187930704 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCGTGC TCACACAAAA CAGCCCGTTT GGCCGGCGTG GGGTTGCCGG ATGGTCGATG
TTCCGGCGTC TGGAGGCGCA GGGGCGGGAA TGGCTGCGCC AGGGCCTGCT GGCCGTGCTG
GCGATCTGGC TGACGGTGTT GTCGCAAGGA GCGCTCGCCG CTGCCTGCAC CGTCTCATTC
TCGACCAACA TGAATGCGCA GAAGTCCTAT GTCTTTACGG CTGCGGACAC GAGCAACTGC
GACCCCTTCC TGTCCGGCAT TGCTTACGAT TCTTCCGGCG GTACAAACAG TTCATCCGGC
CCGCTCTTTC TTACGGCGAC CGCCCAAGGC GGCAAAGTCG CCATCTACAG CGGTTCGGTA
CCGCCATCGG GGGATCCGTA TACCAATGGT TTCGTTTACA CGCCGCCGAG TAACTTCAGC
GGCACTGATA CCGCCACGTT CTACACCAGC AATGACAGCG TCACCTGGGT GCCTAACGGT
ATCGTGAGCA TTGCTGTAAT CCCAACTGCG CCGACGGTGA CGGGCATTGC GCCGAACACA
GGGACGACCG GCGGCGGCAC CTCGGTCAAC ATCAGCGGCA CCAATTTCAC CGTCGCCACG
GCCGTCAAGT TTGGCGCGAC CAACGCCACC AACTTCACCG TCAACAGCGC CACGCAGATC
ACGGCAACAT CACCGGCGGG CAGTACTGGC GTTGTTGATG TGACGGTGAC CAACGGCGGC
GGCACCAGTA CCACCAGCGC GGCTGACCGG TTTACCTACG TGCTGCCGCC AACCGCCGGT
CCGACCAGCA TTACCGTGGC GCACGGCAGT ACTAACAACC ACGCTACGGT GGACGTCACC
GGTGCAACCA GCGTGGCTGT CGGCACGCAG CCGACCCACG GCACGGCCAC GGTCTCGGGC
GGGTCGATCA CCTACACGCC CAACCCGTCG TACTCAGGCA TGGACTCGTT CACCTACACG
GCTAGCAATG CGGGCGGCAC GACGGCGCCG GCCACAATCA CCGTCACCGT GTCGAATGCG
ACGGTCAACT ACGCGCCGTC CTCACCCGCT GGCGGCACTG TCGGTGCGGC CTACAGCCAG
TCACTGGCGT CGGCCAGTGG CGGCACGGCG CCGTACACCT ATACGATCGC GTCCGGCGCG
TTGCCGCCAG GGCTGACGCT GACAAGCAAC GGCATGCTAT CGGGTACACC AACCGCCGAT
GGCAGCTTCA ACTTTGCGGT AACCGCCACC GACAGCAGTA CGGGCACGGG CCCGTTCTCT
GCCACCAGCA GCACGCTGTC GCTGGTGATC GGCACGCCAA CTATTACCGT ATCGCCGGTT
TCGTTGACGA ACGCGACGGT GGCTGCGGCT TACAGCCAGA CGATAACGGC CAGCGGTGGC
ACAGGGCCAT ACACCTATGC CATCACCTCC GGTGCGCTGC CCGCCGGGCT CACGCTCAGT
TCGGGCGGCG TGCTGTCGGG GACGCCCACG GCGGGCGGCA CGTTCAACTT CACCGTGACC
ACCACCGACA GCAGCACCGG TACTGGCCCA TATACGGGCA GCCGTACCTA TACGCTGGTC
GTCAATGCAC CCACGTTGGC GCTCACCCCG GCATCGGGCA GTCTCAGTGC TTCAACCGGC
GTGGCGTACA GCCAGACCTT CACAGGCAGC GGCGGTCTGG CGCCATACAC CTATAGCCTT
GCGGTCCATA GCGGGACGAT GCCGACCGGT CTCTCGTTCA ACACCGGAAC CGGCGTGTTG
TCCGGTACGC CGACCACCAC GGGCGTGGTC AACTTCTCGG TGACTGCCAC CGACCACGCA
ACGGGCGCGG GGCCGTACAG CACGTCTGGC ACCTACACGC TGACCACCTC GGCGCCCACC
ATTACCGTGT CGCCCACCAC CCTGAGTGCG GCGACTGTCG GCGCCGCCTA CGGCCAGACT
GCCGCGGCCG GCGGGGGTGC CGCGCCTTAC AGCTACGCGC TGACTGCCGG TGCGCTGCCG
ACGGGCCTGA GCTTGAACGG CAGCACTGGC GCGATCACTG GTACGCCCAC GGCGGGCGGC
ACCTTCAACT TCGCGGTCAC GGCTACTGAT GCCAACAGCT ATACCGGCTC GCGCGCGTAC
ACCCTGACGG TCAACGCAGC TACCGTCTCG GTCAGCCCGA GCACGTTGCC GGGCGGCACC
ATCGCTACGG CATACAGCCA GACCATGTTG GCCAGCGGCG GCACAGGTCC CTACACGTAT
GCCGTCACGG CAGGTTCGCT GCCGACGGGG CTGACGCTGT CCAGCAACGG CACGCTGTCG
GGTACGCCCA CGGCGGGTGG GGTGTTCAAC TTCACCGTCA CCGCGACTGA CAGCAGTACC
GGAACCGGCC CTTACACGGG TAGCCGTGCC TACTCGCTGA CGATTGGGTC GCCCACCTTG
ACCATCACGC CGGCCTCGGG CTCTCTCAGC GGTGTCGCAG GCACCGCTTA CAGCCGCAAC
TTCACGGCAA GTGGTGGTAC GAACCCATAC ACCTATGGCT TCGTGGTGAA TAGCGGCACT
GTCCCCACGG GCCTTACGTG GAACGGCACC ACCGGCAGGC TGGCAGGGAC CCCAACCACG
GCCGGCACGG TCAGCTTTAC CGTCACCGCT ACCGACAGTT CGACGGGGAC GGGTGCTCCG
TTTGCGGTAA GCGGTGTCTA CACGCTTACC ATTGCCGCGC CTAGCCTGAC GGTATCGCCG
GCCACGCTCC CCAACCCGGG GATTGCAACG GCGTACAGCC AAACCATAAC GGCGGCCAAC
GGCACCGCGC CGTACACCTA TGCTGTTACG GCGGGCGCAT TGCCGGCTGG CCTGAGCCTG
AACACCTCCG GGTTCCTGTC GGGTACACCC ACCGCAGGCG GAACGTTCAA CTTCACCATC
ACGACAACGG ATGCCAACAG CTTCACGGCC AGCCGTGCTT ACAGCGTCAC CATCGGTGCG
CCCACGGTCA CGGTGAATCC GGCGGCCGCA ACGTCGGCCC AAGTCACCAC GGCCTACAGC
CAGACCTTCA CAGCTACCGG CGGTACCGCG CCCTACACGT ACGCCGTCAC CACCGGCACG
TTGCCTGCGG GCCTGAGCTT GAACGCCAGC ACTGGCGTTC TGTCGGGCAC GCCCACTACG
CTGGGCAGCA GCTCATTCAC AGTGAGGGCC ACCGACAGCA GCACGGGCAC TGGCGCCCCG
TACAGCGGTA CGCGCAGCTT CACGATCACG GTGGGCCAGG TGATCGGCAC CGCGCCGGCA
ATCACGGCCA CCACCATGTC GACGGCACCG ATCACGCTGC ATGCAACGGC CAATGCAACC
GGCGGTCCGT TCTCGTCCGT CACGATTGTC AATCCGCCTG CCAGCGGCAC TGCCGTCGTC
AACGGTCTGG ACATCGTCTA CACGCCGACC CAGACCACCT CCGGCGCAGT CAATTTCACT
TATGCGCTGA TCAACACGGC CGGCACGTCC GCGCCGATTC CGGTAACGGT CAACGTGAAC
GCCGTGCCGA TTGCGGTGGC GCAGAGGCAG GCCATCACGT CGTCGGGCCA GGGGGTGAGC
GTGGACTTGA CCGAAGGCGC CACGGGTGGC CCCTTCACGG CGGCGACGCT GGTGTCGGTG
GTGCCCTACA ACGCGGGTAC GGCCAGCATC GTGCAGAAGG CGATCCAGAC ACCGGCCGGC
CTGAAGCCGC AGGCAGTGGC GGCATCGACG TACGTGCTGA ACTTCACCCC GTCAGGCACC
TACAGCGGCC AGGCCGTGCT GACGTACACG CTGTCCAACG CGTTCGCCAC CTCGACGGCT
GCAACGGTGC AGGTGAGCGT GGCGCCGCGC AAGGACCCCT CGGCCGATCC TGATGTGGCA
GGTCTGATCA ACGCGCAAGT GCAGGCCGCG CGCCGCTTCG CCACCACGCA GATTGACAAC
TACAACCGCC GCCTGGAAGC GCTGCACGGC ACTGGCCGGC CACCCTCGAG CAACGGTTTG
ACGGTCGCCA TGCCGGGCCA GCGCGCAGAC ATGCAAGCGC GTTGCCAGGA TGTGGCCGGC
ATTTCCGCGC ACGATGCCTG CATGCGCGGT GACGGTCAGG GCGTGCGGCC ATTCGCACGC
GGCAAGCGCA ACGCCGATGC GGCCAGCGGC AGCACCGACA AGTCGACCGC CGATGCCGGC
CCCGATCTGC CCGGCGCTGA TGCCGCCAGC GCGGGCCCGG ACAACACCGA CCCGAATCTC
GCGTTCTGGA GCGCCGGTAC GCTGGACTTT GGTTTTGCCA GCGCTGGCAC GCAACGCTCC
GGTTTCCGCT TCACCACAGG CGGTGTGACG GCCGGCGCGG ACTACCGCGT GTCCGATCAG
CTCTCGATCG GGGGTGGGTT TGGTTACGGG CGTGACTCCA CCGACATCGG CAACGCGGGC
ACCAGGAGCA CGGGCGACAG CTATAGCCTC GCGCTGTACG GCAGCTATCG CCCGCTGCCT
TCGTTGTTCG TCGATGGTGT GGCCGGCTTC GGCACGCTCA GTTTCGACTC GCGCCGCTGG
GTGACGGACT CCAACGACTT CGCCACCGGC AAGCGCAGCG GCAAGCAGGT TTTCGCCTCC
GTGTCGGCCG GCTATGAGCA TCGCGATCGT GCGTGGCTGA TCTCGCCTTA CGGGCGCCTG
TCGGTCTCGC AATCGACGCT GGATCAGTTC ACCGAATCGG GCGCCGGCAT CAACGCGCTG
ACGTATTTCG ACCAGACGGT GACGACGGTA TCCGGCACGC TCGGCCTGCG TGCGGAATAC
ACGCAGAAGA CCAAGTGGGG CACGTTCCTG CCGTTCGCAC GGGTGGAGTA CCAGCACGAC
TTCAATGGGC AGAGCAATGC AGGTTTGGCG TATGCCGATC TGGCATCGGC AGGCCCTGCT
TATTACGTGC CGGGTACACC GTTTGGGCGC GATCGAATGC AGATCGGGTT GGGGACAAAG
TTCCGGACTG GCCCGCTCAC GTTTGGGTTG GACTACAGCG TGATGGCGGG CATGGGGGGC
TTGCAGCAGG GGGTTCGGTT GACGTTTGCT GCACCGTTCT GA
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| Protein sequence | MRVLTQNSPF GRRGVAGWSM FRRLEAQGRE WLRQGLLAVL AIWLTVLSQG ALAAACTVSF
STNMNAQKSY VFTAADTSNC DPFLSGIAYD SSGGTNSSSG PLFLTATAQG GKVAIYSGSV
PPSGDPYTNG FVYTPPSNFS GTDTATFYTS NDSVTWVPNG IVSIAVIPTA PTVTGIAPNT
GTTGGGTSVN ISGTNFTVAT AVKFGATNAT NFTVNSATQI TATSPAGSTG VVDVTVTNGG
GTSTTSAADR FTYVLPPTAG PTSITVAHGS TNNHATVDVT GATSVAVGTQ PTHGTATVSG
GSITYTPNPS YSGMDSFTYT ASNAGGTTAP ATITVTVSNA TVNYAPSSPA GGTVGAAYSQ
SLASASGGTA PYTYTIASGA LPPGLTLTSN GMLSGTPTAD GSFNFAVTAT DSSTGTGPFS
ATSSTLSLVI GTPTITVSPV SLTNATVAAA YSQTITASGG TGPYTYAITS GALPAGLTLS
SGGVLSGTPT AGGTFNFTVT TTDSSTGTGP YTGSRTYTLV VNAPTLALTP ASGSLSASTG
VAYSQTFTGS GGLAPYTYSL AVHSGTMPTG LSFNTGTGVL SGTPTTTGVV NFSVTATDHA
TGAGPYSTSG TYTLTTSAPT ITVSPTTLSA ATVGAAYGQT AAAGGGAAPY SYALTAGALP
TGLSLNGSTG AITGTPTAGG TFNFAVTATD ANSYTGSRAY TLTVNAATVS VSPSTLPGGT
IATAYSQTML ASGGTGPYTY AVTAGSLPTG LTLSSNGTLS GTPTAGGVFN FTVTATDSST
GTGPYTGSRA YSLTIGSPTL TITPASGSLS GVAGTAYSRN FTASGGTNPY TYGFVVNSGT
VPTGLTWNGT TGRLAGTPTT AGTVSFTVTA TDSSTGTGAP FAVSGVYTLT IAAPSLTVSP
ATLPNPGIAT AYSQTITAAN GTAPYTYAVT AGALPAGLSL NTSGFLSGTP TAGGTFNFTI
TTTDANSFTA SRAYSVTIGA PTVTVNPAAA TSAQVTTAYS QTFTATGGTA PYTYAVTTGT
LPAGLSLNAS TGVLSGTPTT LGSSSFTVRA TDSSTGTGAP YSGTRSFTIT VGQVIGTAPA
ITATTMSTAP ITLHATANAT GGPFSSVTIV NPPASGTAVV NGLDIVYTPT QTTSGAVNFT
YALINTAGTS APIPVTVNVN AVPIAVAQRQ AITSSGQGVS VDLTEGATGG PFTAATLVSV
VPYNAGTASI VQKAIQTPAG LKPQAVAAST YVLNFTPSGT YSGQAVLTYT LSNAFATSTA
ATVQVSVAPR KDPSADPDVA GLINAQVQAA RRFATTQIDN YNRRLEALHG TGRPPSSNGL
TVAMPGQRAD MQARCQDVAG ISAHDACMRG DGQGVRPFAR GKRNADAASG STDKSTADAG
PDLPGADAAS AGPDNTDPNL AFWSAGTLDF GFASAGTQRS GFRFTTGGVT AGADYRVSDQ
LSIGGGFGYG RDSTDIGNAG TRSTGDSYSL ALYGSYRPLP SLFVDGVAGF GTLSFDSRRW
VTDSNDFATG KRSGKQVFAS VSAGYEHRDR AWLISPYGRL SVSQSTLDQF TESGAGINAL
TYFDQTVTTV SGTLGLRAEY TQKTKWGTFL PFARVEYQHD FNGQSNAGLA YADLASAGPA
YYVPGTPFGR DRMQIGLGTK FRTGPLTFGL DYSVMAGMGG LQQGVRLTFA APF
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