Gene Rpic_3545 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3545 
Symbol 
ID6287285 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3714138 
End bp3714857 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content62% 
IMG OID642627129 
ProductOmpW family protein 
Protein accessionYP_001901096 
Protein GI187930609 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3047] Outer membrane protein W 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.506265 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTATA AAAAAGCACT GGCGGCTGCC GCCGGGATGA TCCTCGCCAC CGCCGCGCAC 
GCACAAGCTG CCGGCAGCAA CATCGTCAGC CTCGGCTGGT TCCGCGTGAT GCCGAATAGC
TCGAGCGACC CGCTGGTGGT CAAGAGCATC GGCGGTATCC CGGTGAATCA GTCGCAGTCC
GGCACGGGCG CCAAGATTCA GGAAGCCGAT ACCGTTGGTC TCGCCTTCAC GCATTTCTTT
ACCGACAACG TTGCCGTTGA ACTGGTGGGT GGCATTCCGC CGCGCCACAA GATCGAAGGG
ACGGGCGCGC TGTCGGGTTA CGGCGAAATC GGCTCGGCCA AGCAATGGAG CCCGGCCGTG
CTGGCGAAGT GGTACTTCTT CAACGCCGAC ACCAAGTTCC GTCCGTACGT GGGTCTGGGC
CTGAACTACA CCTGGTTCTC CGACGAGAAG ATCACGAACA GCGCCTTCCA GACGAAGCTG
GCTGGCCCGG GCAGCAAGAG CAACGTGTCG ACCGACGGTT CGTTGAACCC GGTGCTGAAC
GTGGGTGCTA CGTACGCCAT CACCAAGGAC TGGTTCGTTG GCCTGTCGGT GTCGTACCTG
CCGCTCAAGA CCACGGCAAC GATCGACAGC ACTACGGCGA CCGGCGTCCA CGTCGTGAGC
GAAGCGAAGA TCAAGATCAA CCCGGTCGTG ACCTTCCTGA ACGTCGGCTA CCGCTTCTAA
 
Protein sequence
MAYKKALAAA AGMILATAAH AQAAGSNIVS LGWFRVMPNS SSDPLVVKSI GGIPVNQSQS 
GTGAKIQEAD TVGLAFTHFF TDNVAVELVG GIPPRHKIEG TGALSGYGEI GSAKQWSPAV
LAKWYFFNAD TKFRPYVGLG LNYTWFSDEK ITNSAFQTKL AGPGSKSNVS TDGSLNPVLN
VGATYAITKD WFVGLSVSYL PLKTTATIDS TTATGVHVVS EAKIKINPVV TFLNVGYRF