Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_3498 |
Symbol | hemE |
ID | 6288653 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 3668413 |
End bp | 3669516 |
Gene Length | 1104 bp |
Protein Length | 367 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642627083 |
Product | uroporphyrinogen decarboxylase |
Protein accession | YP_001901050 |
Protein GI | 187930563 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.362674 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGCAC CGCTCGCCAA CGACACCTTC CTGCGCGCCC TGCGCCGCCA GCCCACCGAC TACACGCCGC TGTGGCTGAT GCGCCAGGCG GGCCGCTATC TGCCCGAGTA CAACGCCACG CGCGCACGGG CTGGCAGCTT CCTCGGCCTG GCCAAGTCGC CGGCGTATGC GACCGAGGTG ACGCTGCAGC CGCTGGATCG CTATGCGCTG GACGCGGCAA TCCTGTTCTC CGACATCCTG ACCGTGCCCG ACGCCATGGG CCTGGGGCTG TCGTTTGCAC AGGGCGAGGG CCCGCGCTTT GCCAAGCCGG TGCGCACGGA AGCCGATGTG GCTGCGCTGT CGGTGCCTGA CATGTCGTCT CTGCAATACG TGTTCGACGC CGTGGCGGAA ATCCGCCGTG CGCTCGTGCA GGACGGCCGC CAGCGTGTGC CGCTCATCGG CTTCTCGGGC AGCCCGTGGA CGCTCGCCTG TTACATGGTC GAAGGCGGCG GCTCGGACGA CTTCCGCACC GTCAAGTCGA TGCTCTATGC GCGCCCGGAC CTGATGCACC GCATCCTGGA GATCAACGCG CAAGCCGTGA TCGACTATCT CAACGCGCAG ATCGATGCCG GTGCCCAAGC TGTGCAGGTG TTTGATACCT GGGGCGGTGC CTTGGCCGAT GGCATCTATC AGCAGTTCTC GCTGGCCTAC ATGGCGCGCG TGGTGGAAGG CATCCGCGCC GGGGCAGACG GCCAGCGCGT GCCGGTCATC CTCTTCACCA AGGGCGGTGG CCTGTGGCTC GAAGCCATGG CCGAGACCGG TGCCGACGCG CTGGGTGTGG ACTGGACCGT CAACCTGCAG CTTGCGCGCC AGCGAACGGC AGGGCGCGTT GCCCTGCAGG GCAACCTGGA CCCGACGGTG CTGTTTGCTG AACCCGACGC GATTCGTGCC CAAGTGCGTC GCGTGCTGGA AGACTACGCA GCCGGCGGCG GCAGCGACGG CCACATCTTC AACCTCGGCC ACGGCATCTC GCAGTTCACA CCGCCCGAAG CGGTGTCGGT GCTGGTGGAC GAGGTGCACA GCTTCAGCCG CGCGCTGCGC ACGAAAGCGA GGTCACACGG TTGA
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Protein sequence | MSAPLANDTF LRALRRQPTD YTPLWLMRQA GRYLPEYNAT RARAGSFLGL AKSPAYATEV TLQPLDRYAL DAAILFSDIL TVPDAMGLGL SFAQGEGPRF AKPVRTEADV AALSVPDMSS LQYVFDAVAE IRRALVQDGR QRVPLIGFSG SPWTLACYMV EGGGSDDFRT VKSMLYARPD LMHRILEINA QAVIDYLNAQ IDAGAQAVQV FDTWGGALAD GIYQQFSLAY MARVVEGIRA GADGQRVPVI LFTKGGGLWL EAMAETGADA LGVDWTVNLQ LARQRTAGRV ALQGNLDPTV LFAEPDAIRA QVRRVLEDYA AGGGSDGHIF NLGHGISQFT PPEAVSVLVD EVHSFSRALR TKARSHG
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