Gene Rpic_3498 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3498 
SymbolhemE 
ID6288653 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3668413 
End bp3669516 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content67% 
IMG OID642627083 
Producturoporphyrinogen decarboxylase 
Protein accessionYP_001901050 
Protein GI187930563 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0407] Uroporphyrinogen-III decarboxylase 
TIGRFAM ID[TIGR01464] uroporphyrinogen decarboxylase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.362674 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCAC CGCTCGCCAA CGACACCTTC CTGCGCGCCC TGCGCCGCCA GCCCACCGAC 
TACACGCCGC TGTGGCTGAT GCGCCAGGCG GGCCGCTATC TGCCCGAGTA CAACGCCACG
CGCGCACGGG CTGGCAGCTT CCTCGGCCTG GCCAAGTCGC CGGCGTATGC GACCGAGGTG
ACGCTGCAGC CGCTGGATCG CTATGCGCTG GACGCGGCAA TCCTGTTCTC CGACATCCTG
ACCGTGCCCG ACGCCATGGG CCTGGGGCTG TCGTTTGCAC AGGGCGAGGG CCCGCGCTTT
GCCAAGCCGG TGCGCACGGA AGCCGATGTG GCTGCGCTGT CGGTGCCTGA CATGTCGTCT
CTGCAATACG TGTTCGACGC CGTGGCGGAA ATCCGCCGTG CGCTCGTGCA GGACGGCCGC
CAGCGTGTGC CGCTCATCGG CTTCTCGGGC AGCCCGTGGA CGCTCGCCTG TTACATGGTC
GAAGGCGGCG GCTCGGACGA CTTCCGCACC GTCAAGTCGA TGCTCTATGC GCGCCCGGAC
CTGATGCACC GCATCCTGGA GATCAACGCG CAAGCCGTGA TCGACTATCT CAACGCGCAG
ATCGATGCCG GTGCCCAAGC TGTGCAGGTG TTTGATACCT GGGGCGGTGC CTTGGCCGAT
GGCATCTATC AGCAGTTCTC GCTGGCCTAC ATGGCGCGCG TGGTGGAAGG CATCCGCGCC
GGGGCAGACG GCCAGCGCGT GCCGGTCATC CTCTTCACCA AGGGCGGTGG CCTGTGGCTC
GAAGCCATGG CCGAGACCGG TGCCGACGCG CTGGGTGTGG ACTGGACCGT CAACCTGCAG
CTTGCGCGCC AGCGAACGGC AGGGCGCGTT GCCCTGCAGG GCAACCTGGA CCCGACGGTG
CTGTTTGCTG AACCCGACGC GATTCGTGCC CAAGTGCGTC GCGTGCTGGA AGACTACGCA
GCCGGCGGCG GCAGCGACGG CCACATCTTC AACCTCGGCC ACGGCATCTC GCAGTTCACA
CCGCCCGAAG CGGTGTCGGT GCTGGTGGAC GAGGTGCACA GCTTCAGCCG CGCGCTGCGC
ACGAAAGCGA GGTCACACGG TTGA
 
Protein sequence
MSAPLANDTF LRALRRQPTD YTPLWLMRQA GRYLPEYNAT RARAGSFLGL AKSPAYATEV 
TLQPLDRYAL DAAILFSDIL TVPDAMGLGL SFAQGEGPRF AKPVRTEADV AALSVPDMSS
LQYVFDAVAE IRRALVQDGR QRVPLIGFSG SPWTLACYMV EGGGSDDFRT VKSMLYARPD
LMHRILEINA QAVIDYLNAQ IDAGAQAVQV FDTWGGALAD GIYQQFSLAY MARVVEGIRA
GADGQRVPVI LFTKGGGLWL EAMAETGADA LGVDWTVNLQ LARQRTAGRV ALQGNLDPTV
LFAEPDAIRA QVRRVLEDYA AGGGSDGHIF NLGHGISQFT PPEAVSVLVD EVHSFSRALR
TKARSHG