Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_3496 |
Symbol | putA |
ID | 6288651 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 3661312 |
End bp | 3665283 |
Gene Length | 3972 bp |
Protein Length | 1323 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642627081 |
Product | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_001901048 |
Protein GI | 187930561 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.271253 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTACAA CCACCCTCGG GGTCAAGCTG GACGATGCTT CGCGTGAACG CCTCAAGCGC GTTGCGCAGT CCATTGACCG CACGCCGCAC TGGCTGATCA AGCAGGCGAT CTTCACGTAT CTGGACCAAG TGGAGCGGGG GCAGCTGCCA AATGACGCAA ACGGCACGGC GGCGGATGGC CTCCCGTCCG CCGCCGCCGC CGTCTCCGAC GTGCATGACG GCGATGACGC CGCGGTGCAA CCGTTCCTCG AATTTGCGCA AAGCGTGCAA CCGCAGTCGG TTCTGCGCGC GGCCATCACC GCAGCCTACC GCCGCCCTGA AACCGAAGCC ATTCCGATGC TGCTCGAGCA GGCCCGCCTG CCGGGCGCGC TCGCCTCGGA AGCCAAGCAG CTCGCGCGGG ATCTGGCCGG CAAGCTGCGT ACGCAAAAGG TCGGCACCGG CCGTGAAGGG CTGGTGCAGG GCCTCATTCA AGAATTCTCC CTGTCGAGCC AGGAAGGCGT GGCGCTGATG TGCCTGGCCG AAGCGCTGCT GCGCATTCCG GACAAGGCCA CGCGCGACGC GCTCATCCGC GACAAGATCA GCAACGGCAA CTGGTATTCG CATGTCGGCC AGAGCCCGTC GCTGTTCGTG AATGCCGCCA CCTGGGGTCT GCTGCTCACG GGCAAGCTGG TGGCCACGCA CAACGAAGCA GGGCTGTCGA AGGCGCTCAC GCGCATCATC GGCAAGAGCG GCGAACCGCT GATCCGCAAG GGTGTGGACA TGGCGATGCG CCTGATGGGC GAGCAGTTCG TCACCGGCGA AACCATTTCC GAAGCGCTGG CCAACGCGCG CAAGTTCGAG GCCGAAGGCT TCCGCTACTC CTACGACATG CTCGGCGAGG CCGCGATGAC GGAGGAAGAC GCGCAGCGCT ACCTCGCGTC GTACGAGCAG GCCATCCGCG CGATCGGGCA GGCCTCGGGC GGGCGCGGCA TCTACGAAGG GCCGGGCATC TCGATCAAGC TGTCGGCGCT GCACCCGCGC TACAGCCGCG CGCAGTACGA CCGCACGATC AACGAGCTGT ATCCGCGCGT GAAGGCGCTG GCGATGCTGG CGCGTGAATA CGACATCGGC ATCAACATCG ACGCCGAAGA GGCCGACCGC CTGGAACTGT CGCTCGACCT GCTCGAGCGC CTGTGCTTTG CGCCCGAGCT GGCCGGCTGG AACGGCATCG GCTTCGTGGT GCAGGGCTAC CAGAAGCGCT GCCCGTTCGT GCTCGACTAC ATCATCGATC TGGCTCGTCG CAGCAAGCAC CGCCTGATGA TCCGCCTCGT AAAGGGCGCG TACTGGGACA GCGAGGTCAA GCGCGCCCAG GTCGACGGCC TGGAGGGCTA CCCGGTCTAC ACGCGCAAGG TCTACACCGA CGTGTCGTAC CTGGCCTGCG CGCGCAAGCT GCTGGCCGCG CCGGAGGCGA TCTTCCCGCA GTTCGCCACG CACAACGCGC ACACGCTGGC GGCCATTTAC CACATGGCCG GCCAGAACTA TTACCCCGGC CAATACGAAT TCCAGTGCCT GCACGGCATG GGCGAGCCGC TGTACGAGCA GGTCGTCGGC AACAAGCCGG GCAAGCTGAA CCGCCCGTGC CGCATCTACG CGCCGGTCGG TACGCACGAA ACGCTGCTGG CCTACCTGGT GCGCCGTCTG CTGGAAAACG GCGCCAACAC CTCGTTCGTG AACCGCATTG CGGACGAGTC GATTCCGCTG GACGACCTCG TCGCCGACCC GGTGGCGGTG GTGGAAAAGA TGCACGCCGA TGAAGGGACG CTCGGCCTGC CGCATCCGAA GATTCCGCTG CCGCGCGCCC TTTACGGTGA CGTTCGCGCA AACTCGTCGG GCATCGACCT GGCGAACGAG CAGCGCCTGG CGTCGTTGTC GTCCGCCCTT CTTGCCGGCA CCAGCACGGT CTGGACCGCC GAGCCGACGA TCGGCGACGC ATCGTACGTG GGTGGCGCGC CGCAGCCGGT GCGCAATCCG GCGGACCTGC GCGACATCGT CGGCCATGTG ACGGAAGCCA CCGAAGCCGA TGTGGATGCC GCGCTGTCGG CCGCCACCGC CGCCGCCCCG ATCTGGCAAG CCACGCCGCC GGAAGCGCGC GCTGCGCTGC TCGATCGCGC CGCCGACTTG ATGGAAGGCG AGATGCAGCA CCTGATGGGC CTGATCATCC GCGAGGCCGG CAAGACGCTG TCCAACGCCA TCGCCGAGGT GCGCGAAGCC GTCGACTTCC TGCGCTATTA CGCGGCGCAG GTGCGCGGTG GGTTCTCCAA CGACACGCAC CGTCCGCTGG GCCCGGTGGT CTGCATCAGC CCGTGGAACT TCCCGCTGGC GATCTTCACC GGCCAGGTCA GCGCCGCGCT GGCTGCGGGC AACCCGGTGC TGGCCAAGCC CGCTGAACAG ACCCCGCTGA TTGCGGCGCA AGCCGTGCGC ATCCTGCGCG AAGCCGGCGT GCCGGCCGGT GCCGTGCAAC TGCTGCCGGG CCGCGGTGAG ACTGTCGGCG CGGCGCTGGT GAAGGACGGG CGCACCAAGG GCGTGATGTT CACCGGCTCG ACTGAAGTCG CGCGCATCCT GCAGCGCACG CTTGCCGGCC GCCTGGATGC CAACGGCGCG CCGATTCCGC TGATTGCCGA GACCGGCGGT CAGAACGCGA TGATTGTCGA TTCGTCGGCG CTGGCTGAGC AGGTGGTGGC CGATGTGCTG TCGTCTGCGT TTGATTCGGC AGGCCAGCGT TGTTCGGCGC TGCGCGTGCT GTGCCTGCAG GATGACGTCG CCGACCGCGT GCTCGCGATG CTCAAGGGTG GCATGGCCGA GCTGGCGATG GGCAATCCGG ATCGTCTCGC CACCGATGTC GGCCCGGTGA TCGACGCCGA AGCGCGCGAC AACATCGTCG GCCACATCGA AGCGATGCGC GCCAAGGGCC GCCGTGTGCA TCAGGCACCG GTGCCGGCCG CATGCGCGCA CGGCACGTTC GTGCCGCCGA CGGTGATCGA ACTCGACAGC CTGTCGGACC TGACGCGCGA GATCTTCGGC CCCGTGCTGC ACGTGGTGCG CTGGAAGCGT ACGGCGGACA ACGCTGGCCT GACCAAGCTG GTCGAACAGA TCAACGGCAC GGGCTACGGC CTGACGCTGG GCATCCACAC GCGCATCGAC GAGACCATCG CACACGTGGT CGACCGCGCG CACGTCGGCA ACCTGTATGT GAACCGCAAT ATCGTCGGCG CCGTGGTGGG CGTGCAGCCG TTCGGCGGCG AAGGGCTGTC GGGTACGGGC CCGAAGGCCG GCGGCCCGCT GTATCTGCTG CGTCTGCTGT CGACCTGCCC GCAGGACGCC ATGCGCACCG CAATGCAACT CACCGCTGGT GCCGGTACGG AGGTCGATAC CGACGCGCGC CGCGCGCTGC TGGCGCCGTT CGATGCGCTG ACGGAATGGG CACGCCAGCA ATCGCCGGAA CTGGCGGCGC TGTGCGAGCG CCTGGCTGCA GCCTCGGCCA CGGGCGCCAC CGCCACGCTG CCCGGCCCGA CCGGCGAGCG CAACACCTAC ACGCTGTTGC CGCGCGAAGC CGTGCTGTGC GTGGCGGCCG ATCCGGCGGA TTGGCTGCGC CAACTGGCGG CCGTGCTGGC TGTCGGCAGC GTGGCCGTTG TGCAGGAAAA CCCTGCCATC GAAGCAGTAC TTCGGGGCTT GCCGGCGGCA GTACAATCGC GCGTCCGCGT GGTCGGCTCG ACCGACGAAG CGGCGTTTGA TGCGGTGCTG CATCACGGCG ATTCGGACCA TCTGCGCGCC ATCTGCGAAG GACTGGCACG ACGTGCCGGC CCGATCGTGG GGGTGCAAGG CCTGCCGCAC GGCGGGGAAG GGCTGGCGCT GGAGCGCCTG CTGATCGAGC GTTCGCTGTC GGTCAATACG GCCGCCGCGG GTGGCAACGC CAGCCTGATG ACCATCGGCT GA
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Protein sequence | MATTTLGVKL DDASRERLKR VAQSIDRTPH WLIKQAIFTY LDQVERGQLP NDANGTAADG LPSAAAAVSD VHDGDDAAVQ PFLEFAQSVQ PQSVLRAAIT AAYRRPETEA IPMLLEQARL PGALASEAKQ LARDLAGKLR TQKVGTGREG LVQGLIQEFS LSSQEGVALM CLAEALLRIP DKATRDALIR DKISNGNWYS HVGQSPSLFV NAATWGLLLT GKLVATHNEA GLSKALTRII GKSGEPLIRK GVDMAMRLMG EQFVTGETIS EALANARKFE AEGFRYSYDM LGEAAMTEED AQRYLASYEQ AIRAIGQASG GRGIYEGPGI SIKLSALHPR YSRAQYDRTI NELYPRVKAL AMLAREYDIG INIDAEEADR LELSLDLLER LCFAPELAGW NGIGFVVQGY QKRCPFVLDY IIDLARRSKH RLMIRLVKGA YWDSEVKRAQ VDGLEGYPVY TRKVYTDVSY LACARKLLAA PEAIFPQFAT HNAHTLAAIY HMAGQNYYPG QYEFQCLHGM GEPLYEQVVG NKPGKLNRPC RIYAPVGTHE TLLAYLVRRL LENGANTSFV NRIADESIPL DDLVADPVAV VEKMHADEGT LGLPHPKIPL PRALYGDVRA NSSGIDLANE QRLASLSSAL LAGTSTVWTA EPTIGDASYV GGAPQPVRNP ADLRDIVGHV TEATEADVDA ALSAATAAAP IWQATPPEAR AALLDRAADL MEGEMQHLMG LIIREAGKTL SNAIAEVREA VDFLRYYAAQ VRGGFSNDTH RPLGPVVCIS PWNFPLAIFT GQVSAALAAG NPVLAKPAEQ TPLIAAQAVR ILREAGVPAG AVQLLPGRGE TVGAALVKDG RTKGVMFTGS TEVARILQRT LAGRLDANGA PIPLIAETGG QNAMIVDSSA LAEQVVADVL SSAFDSAGQR CSALRVLCLQ DDVADRVLAM LKGGMAELAM GNPDRLATDV GPVIDAEARD NIVGHIEAMR AKGRRVHQAP VPAACAHGTF VPPTVIELDS LSDLTREIFG PVLHVVRWKR TADNAGLTKL VEQINGTGYG LTLGIHTRID ETIAHVVDRA HVGNLYVNRN IVGAVVGVQP FGGEGLSGTG PKAGGPLYLL RLLSTCPQDA MRTAMQLTAG AGTEVDTDAR RALLAPFDAL TEWARQQSPE LAALCERLAA ASATGATATL PGPTGERNTY TLLPREAVLC VAADPADWLR QLAAVLAVGS VAVVQENPAI EAVLRGLPAA VQSRVRVVGS TDEAAFDAVL HHGDSDHLRA ICEGLARRAG PIVGVQGLPH GGEGLALERL LIERSLSVNT AAAGGNASLM TIG
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