| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3260 |
|---|
| Symbol | |
|---|
| ID | 6286223 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 3410000 |
|---|
| End bp | 3410860 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642626836 |
|---|
| Product | putative transmembrane anti-sigma factor |
|---|
| Protein accession | YP_001900814 |
|---|
| Protein GI | 187930327 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG5662] Predicted transmembrane transcriptional regulator (anti-sigma factor) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.760903 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.404575 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTCCA ATTCCATTCA TATCGACGAA CTCCATGCGT ATGCCGACGG CCGCTTGCCC
GCGGCGCGCC GTGCTGCCGT GGAGGCCTAT CTTGCCGCGC ACCCCGGCGC CGCGGCTGAA
GTTGCGGCTT GGCGCGAGAC GGATGCGCAA TTGCACCGCG CGCTCGATCC GCTGCTGAAC
GAACCGGTGC CGCAGCGTCG CATTCCGGCA GCGATCCTTG CGGTAGCACG TCGCCCCACG
GCCAGCGGCT TTGGCGCCAT GCGCGGATGG AGCGTGGTGG CGCTGAGTGT GGCGTGCCTA
GCCGTCGGGT CCGGGGCCGG CTGGCTGAGT CGAGGTGCCG TTGAGCGCAC CATGCCCATG
CAACGGTTCG CCAACGATGC ACTCGTATCG CACGTCGTCT TTTCTCCGGA GTCGAAACAC
ATCGTGGAAG TGCCGGCCGA CGAGGAGGCG CATCTGGTCA CATGGTTGTC GCGTCGGCTC
GACGCACAGC TGCACGTGCC TGATCTGACA TCGCTGGGCT ACCGGCTCAT CGGCGGGCGC
CAGACGGTGG TGGCAGATGC GCCGACGGCC ATGCTGATGT ACGAGGGCCC CGGGGGCACG
CGTATCTCCG TACAGTTGCG GCGCATGCCA AACAACCGCG ATACCGGCTT CCGGCTGGAG
ACGCTCGCGC CCGACAACCG TGTGCTGCAA GCGATTCATC CGGCGGTCGA TCATCCGCCG
CCGATGGCGT TCTACTGGGC GGATCACGGC CTCGGGTTTG CGGTCGCCGG CCCGCTGGGG
CGGACGCAGT TACTGGAAGT GGCGCAAGCC GTCTATCGGC AGTACAGCGA ATTCACCGGG
CCAGCGCCCC GCAAGGAATA G
|
|---|
| Protein sequence | MSSNSIHIDE LHAYADGRLP AARRAAVEAY LAAHPGAAAE VAAWRETDAQ LHRALDPLLN
EPVPQRRIPA AILAVARRPT ASGFGAMRGW SVVALSVACL AVGSGAGWLS RGAVERTMPM
QRFANDALVS HVVFSPESKH IVEVPADEEA HLVTWLSRRL DAQLHVPDLT SLGYRLIGGR
QTVVADAPTA MLMYEGPGGT RISVQLRRMP NNRDTGFRLE TLAPDNRVLQ AIHPAVDHPP
PMAFYWADHG LGFAVAGPLG RTQLLEVAQA VYRQYSEFTG PAPRKE
|
|---|
| |