| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3249 |
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| Symbol | |
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| ID | 6287134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 3398127 |
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| End bp | 3400292 |
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| Gene Length | 2166 bp |
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| Protein Length | 721 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642626825 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_001900803 |
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| Protein GI | 187930316 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATGC GTCTTGTGAA GGGCGGCCTG TCGCAGGCAA CCCGAGTGGC CCGGGGGGGC
GCGGTGGCAT GGCTTTCGCT GTGCCTGTTC ATGGTGGCCG GTCAGGCGGT CGCTCAGCAG
GCAGCGCCTG CGGCGGCCGT CTCCGGCAAC ACGATTGAAA AGGTAGAGCA GGCCACGGCC
GGTGAATCCA CCGTGGTGAC GGTCACGCTC AAGAGCGCGC CGACCCAGAA GCCGGTGGAG
TTCAGCACGC AGCAGCCTGC GCGTATCGCC ATCGACTTCT TCGGGGCGAC CTTCGCGCAA
GGCCGCGCCA ATTACCAGTA CGGCGGCAAG CTGCTGCGTT CGGCGAACGT CGTGCAGATC
GGCGACCGTA CCCGCGTCGT GCTCGATCTA TCGCGCCAGA CGCAGTACAA GTCGGAGGTG
CGTGGCAACC AGTACGTACT GACGCTGGAA GCTGCGCCAG TGGCGGCGGC TGTCGCGGCG
CCGACATTCT CGGCCCCGGC CCCCGTCGCG GGCGCCGAGC GCCCTGCGGT GCGCAATGTT
GATTTCCGCC GCGGCGAGGA TCTCGCCGGC CGCGTGGTGG TCGACCTGTC GACTGCCAAC
TCGGCGATCA ACATCGCCCA GCAAGGCCAG AACCTCGTCG TGGACTTCGT CGGTGCGACG
CTGCCACAGT CGCTGCGCCG TCGCTATGAC GTGAGCGATT TCGGCACGCC GGTGCAGGCC
ATGCGTGCCA CCGACAACGG CACAGGCGCA CGCCTGATCA TCGAGCCGCG CGGTAACTGG
CAATACAGCT CGTACCAGAC CGACACGCAG TTCGTGGTGG AGGTGCGTCC GACCAAGGAA
GACCCGAACA AGCTGATTTC CGGCCCCGGC TACCGCGGTG AGCGCCTGTC GCTGAACTTC
CAGAACATCG ATGTGCGTTC TTTGCTGCAA GTCTTCGCCG ACTTCACGAA CCTCAACATC
GTGACCAGCG ATAGCGTGAC GGGCACCCTT TCGCTGCGCC TGAAAGATGT GCCCTGGGAT
CAGGCACTGC AGATCGTGCT CGATTCGAAG GGGCTGGCAT CGCGTCGCAA CGGCAACGTC
CTGTGGGTTG CCCCGCGCGG TGAGCTGGCC ACGAAGGAAA AGGCCGAGCT TGAGTCGCAG
CAGCAAGTGA CCGAGCTGGA GCCACTGCGC AGCCAGGTGT TCCGCCTGAA CTACCAAAGC
GCTGGGGATG TGCGCAACAT GCTGCTGGGT GCCGGCGCCG CGGGTGGGGC AGGCGGTGTC
GCTGGCGGTG CCGCGACTTC CCGGATCCTG TCCAAGCGCG GCTCGCTCAC GGCGGATACG
CGTACGAATC AACTGTTCGT CTCCGACATC CCGAGCAAGC TTGAAGAGGT GCAGGCCTTC
CTCTTGAAGA TCGACATCCC GGTTCGCCAG GTGATGATCG AAGCGCGCAT CGTCGAGGCG
GACGACACGT TCAGCCGCAA CTTGGGTGCG AAGCTGGGCT TCGCGTCGAA GACGAATGGC
GCTGGTTACG GCAATACCTA CACCAACGTG GTGTCGCCGA TTACGCAGGG CGCCACGTGG
GACAACAGCC CGGCGATCAG CTTCCCCGCC AACGGCATCA ATGGTGTGAA CGCGGCCAGC
GTGGCCGTGA GCCTGTTCAA CGCCGGTGCC GGCCGCTTCC TGGCGCTCGA GTTGTCTGCG
CTGGAAGCTG ATGGCCGCGG CAAGATCGTC TCCAGCCCGC GCGTGGTCAC TGCCGACAAC
ATCAAGGCGC TGATCGAGCA AGGTACTGAG ATTCCGTACC AGCAGGCGAC GTCTTCCGGT
GCGACTTCGG TGTCGTTCAA GAAGGCCAAC CTGAAGCTGG AAGTGACGCC GAAGATCACG
CCGGACGGCA ACATCTTCCT GGATGTCGAC GTCAACAAGG ACAGCGTGGG GATCCAGACC
ACCAACGGCT TCGCCATCGA CACCAAGCAC GTGCAGACGC AGGTGCTGGT CGAGAACGGC
GGCACGGTCG TGATCGGCGG TATCTACACG CAGAACGAGC GGACCGACAT CAACAAGGTG
CCGCTGCTAG GCGACATTCC GGTGCTCGGC AATCTGTTCA AGAGCACGAG CAAGATCAAC
AACCGCACGG AGCTGCTGGT CTTCCTGACG CCGCGTGTGC TGTCCGATCA ACTGTCGCTG
AAGTAA
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| Protein sequence | MTMRLVKGGL SQATRVARGG AVAWLSLCLF MVAGQAVAQQ AAPAAAVSGN TIEKVEQATA
GESTVVTVTL KSAPTQKPVE FSTQQPARIA IDFFGATFAQ GRANYQYGGK LLRSANVVQI
GDRTRVVLDL SRQTQYKSEV RGNQYVLTLE AAPVAAAVAA PTFSAPAPVA GAERPAVRNV
DFRRGEDLAG RVVVDLSTAN SAINIAQQGQ NLVVDFVGAT LPQSLRRRYD VSDFGTPVQA
MRATDNGTGA RLIIEPRGNW QYSSYQTDTQ FVVEVRPTKE DPNKLISGPG YRGERLSLNF
QNIDVRSLLQ VFADFTNLNI VTSDSVTGTL SLRLKDVPWD QALQIVLDSK GLASRRNGNV
LWVAPRGELA TKEKAELESQ QQVTELEPLR SQVFRLNYQS AGDVRNMLLG AGAAGGAGGV
AGGAATSRIL SKRGSLTADT RTNQLFVSDI PSKLEEVQAF LLKIDIPVRQ VMIEARIVEA
DDTFSRNLGA KLGFASKTNG AGYGNTYTNV VSPITQGATW DNSPAISFPA NGINGVNAAS
VAVSLFNAGA GRFLALELSA LEADGRGKIV SSPRVVTADN IKALIEQGTE IPYQQATSSG
ATSVSFKKAN LKLEVTPKIT PDGNIFLDVD VNKDSVGIQT TNGFAIDTKH VQTQVLVENG
GTVVIGGIYT QNERTDINKV PLLGDIPVLG NLFKSTSKIN NRTELLVFLT PRVLSDQLSL
K
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